Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2271 ATGAAGTCGGCCATTGAAGAGTTGTCGAAACCGGCTTCGGCTGAGATTTTGGGCGGTGGGGGTTGGGTTGTGATATTCCCAGATGAGGTTCCACTGTTTGTTGTTTACTTTCTGAAGATTCAGATTGTCGTTGTTGCCTTCTTGGAAGATACTTTGGTGCTTCAAATTTGTGGGTCAATTTCTTTTTGTTTGTTGGATCTCACTGAAATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCAGAAGGGGAGGGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTCGATGCCCATATACCGAGTTATCCAAGCTTGCCGCCCCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTGGACTTTTCTCAGCAGCCACCGGCTCAGGAGTTAATTGCCAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAACGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAAAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTAATGCCCTCGTCCGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGCCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCATCAGAGTTCATCATACCTCTAGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGCTTTAGAATGCTATTTGAAACGGAAGAATCAAGTGTTCGTCGTTACATGGGCACTATTACTGGTATCGGCGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCGCTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTTCGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTCCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCAATGGTGGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGGTAAGGCGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCACCTCAGATGTTGCAGCCTCAGCCTCAACCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCACCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCTAATGCCAACCATGTAACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACTTGGCCGTCAAAGCGAGCTGCAGTGGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATGCTATTTTGTTGCCGCCTTTTCCTGGAAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTTTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCGTCCAATTATGTGAATACTGCTGGTAACAACTTCTCTGCCAGTCCAACTGGAACAGGAACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAATTTGTCAACAGTGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACGCGGCCTAGAGCTCTTGAACTCAGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAATAGACAGGAATCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA 2931 46.67 MKSAIEELSKPASAEILGGGGWVVIFPDEVPLFVVYFLKIQIVVVAFLEDTLVLQICGSISFCLLDLTEMRLSTAGFSPQAPEGEGRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPGKAQAASLLQFQQTQNLPNRPTFMPPQMLQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNHQQQQQQQQQQQQPQQQVFDHQQIPSPISTMSQFSSASQSQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNAILLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGNNFSASPTGTGTPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36246732 36252079 - CcPI632755_04g022710.1 Cco04g2271 177496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2271 976 SMART B3_2 196 298 IPR003340 GO:0003677(InterPro)
Cco04g2271 976 MobiDBLite consensus disorder prediction 626 645 - -
Cco04g2271 976 Gene3D - 194 297 IPR015300 -
Cco04g2271 976 Pfam AUX/IAA family 839 931 IPR033389 -
Cco04g2271 976 ProSiteProfiles B3 DNA-binding domain profile. 196 298 IPR003340 GO:0003677(InterPro)
Cco04g2271 976 MobiDBLite consensus disorder prediction 564 618 - -
Cco04g2271 976 Gene3D - 360 432 - -
Cco04g2271 976 FunFam Auxin response factor 360 432 - -
Cco04g2271 976 CDD B3_DNA 195 296 IPR003340 GO:0003677(InterPro)
Cco04g2271 976 Pfam B3 DNA binding domain 196 298 IPR003340 GO:0003677(InterPro)
Cco04g2271 976 Gene3D - 839 931 - -
Cco04g2271 976 ProSiteProfiles PB1 domain profile. 842 926 IPR053793 -
Cco04g2271 976 Pfam Auxin response factor 322 404 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco04g2271 976 MobiDBLite consensus disorder prediction 542 618 - -
Cco04g2271 976 FunFam Auxin response factor 837 931 - -
Cco04g2271 976 MobiDBLite consensus disorder prediction 549 563 - -
Cco04g2271 976 SUPERFAMILY DNA-binding pseudobarrel domain 181 325 IPR015300 -
Cco04g2271 976 FunFam Auxin response factor 194 298 - -
Cco04g2271 976 SUPERFAMILY CAD & PB1 domains 834 917 - -
Cco04g2271 976 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 89 933 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2271 Cco-Chr4:36246732 Cco11g0036 Cco-Chr11:420483 1.40E-13 dispersed
Cco01g0869 Cco-Chr1:9308855 Cco04g2271 Cco-Chr4:36246732 3.60E-256 transposed
Cco05g2092 Cco-Chr5:29905794 Cco04g2271 Cco-Chr4:36246732 1.80E-175 transposed
Cco11g0155 Cco-Chr11:1637219 Cco04g2271 Cco-Chr4:36246732 6.70E-174 transposed
Cco11g1173 Cco-Chr11:22869457 Cco04g2271 Cco-Chr4:36246732 5.20E-169 transposed
Cco03g0798 Cco-Chr3:8515924 Cco04g2271 Cco-Chr4:36246732 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59165 PF02309 AUX_IAA 3.30E-07 CL0072 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2271 K14486 - csv:101210406 1682.54