Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2301 ATGGCGCTTGTCATGCACAAAGATTCATCGAACAAACAAATGGATTCAAGCAAATACGTACGGTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCGAAGCCTAGTTCTCTCAGAAGGCAGCAGCTCATTAGAGAGTGCCCTATCCTTTCTAACATTGAGCCTAAGCAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAGAGGAAGGAATCATCTCGCCTCCAGAGCGTAAATAGAAAGTTGTCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATTCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTCGCGATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGCAGTGGTGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACAAAGGTTGCAGAAATTCTCAAAGATCGCCTTTCATGGTATCGTGACTGCCGCTGTCTTAATGTCTTAAGTGTAATTCCTACGGGAAATGGGGGAACAGTAGAGCTCATATATATGCAGACTTATTCTCCAACGACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTTTGTGAGAGGTCATTATCTACTTCAAGTGGTGGTCCAGCAGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATTTAATACGAGCGTGCGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAGTCATCCAAGATCCTTGCTCAGAAAATGACAATTGCTGCATTGCGTCACATTAGACAAATTGCTCAGGAGACTAATGGAGAAATTCAATGTACTGGTGGACGTCAACCAGCTGTACTGAGGACGTTTAGTCAAAAACTTTGCAGGGGTTTTAACGATGCTGTCAACGGCTTTGCTGATGATGGTTGGTCACCTATGGGCAGTGATGGTGTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTTCCTGGATCCCAGTACAATACGTCTTTGTATCCCTCTTTTGGCGGAGGAGTGATGTGTGCTAAAGCATCAATGTTGCTTCAGAATGTTCCCCCTGCTTTACTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCTTACTCTGCTGCAAGTTTAAAAGCCAGTCCGTATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAAGTTATTTTGCCTCTTGCTCCTACTGTGGAGCACGAGGAGTTTTTGGAGGTGGTTCGGTTGGAGGGCCTTGCATTCTCTCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGTGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCTGATGATGCTCCCCTACTTCCTTCAGGGTTTCGTGTCATACCGCTGGATCCGAAAACGGATGAGCCTACTGCTGCTAGAACACTGGATTTGGCCTCTACACTTGAAGTTGGTGCCAATGCTGCACGATCTGCTGGTGAAACCGATTTGAGCAGCTACAACCTTCGTTCAGTCTTGACTATTGCTTTCCAGTTCACCTTTGAGAATCACCTACAGGAAAATGTGGCTGCTATGGCTCGACAATATGTTCGTAGTGTTGTTGGGTCAGTTCAGAGGGTTGCCATGGCCATTTCCCCTTCGCGGTTGAGTTCCAGTACGGGACTTAAGCCTCTTCCTGGTTCTCCTGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGTTGAACTCCTTCAAGCCGATTCCCAGTCTGGGGATGCCATGTTGAAGAAGCTTTGGCACCACTCCGACGCAATCATGTGTTGCTCTGTTAAAACCAACGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTGGACAAAATTCTCGATGAGGCGGGTCGGAAGATTCTTTGCTCTGAGTTCCCCAAAATAATGCAGCAGGGGTTTGCAAATCTTCCCTCGGGCATTTGCATATCCAGCATGGGCCGTCCCATTTCTTATGAGCAAGCCATTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTAGCTTTCATGTTCATCAACTGGTCCTTTGTTTGA 2544 46.82 MALVMHKDSSNKQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHSNRDVNNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTVELIYMQTYSPTTLAAARDFWTMRYTTSLEDGSLVVCERSLSTSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETNGEIQCTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGVEDVTIVINSSANKFPGSQYNTSLYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAISPSRLSSSTGLKPLPGSPEALTLARWICRSYRIHVGVELLQADSQSGDAMLKKLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICISSMGRPISYEQAIAWKVLNDDDSNHCLAFMFINWSFV 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36539751 36545035 - CcPI632755_04g023010.1 Cco04g2301 177526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2301 847 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Cco04g2301 847 CDD START_ArGLABRA2_like 161 377 - -
Cco04g2301 847 Gene3D - 200 385 IPR023393 -
Cco04g2301 847 Pfam MEKHLA domain 702 846 IPR013978 -
Cco04g2301 847 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Cco04g2301 847 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Cco04g2301 847 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Cco04g2301 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 847 IPR044830 GO:0003700(InterPro)
Cco04g2301 847 Pfam START domain 167 374 IPR002913 GO:0008289(InterPro)
Cco04g2301 847 Gene3D - 9 85 - -
Cco04g2301 847 CDD bZIP 70 109 - -
Cco04g2301 847 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Cco04g2301 847 SUPERFAMILY Bet v1-like 167 378 - -
Cco04g2301 847 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Cco04g2301 847 MobiDBLite consensus disorder prediction 123 159 - -
Cco04g2301 847 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Cco04g2301 847 Coils Coil 83 107 - -
Cco04g2301 847 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1512 Cco-Chr1:27169476 Cco04g2301 Cco-Chr4:36539751 0.00E+00 transposed
Cco02g2268 Cco-Chr2:35217665 Cco04g2301 Cco-Chr4:36539751 0.00E+00 transposed
Cco09g0011 Cco-Chr9:73107 Cco04g2301 Cco-Chr4:36539751 0.00E+00 transposed
Cco11g1561 Cco-Chr11:28509687 Cco04g2301 Cco-Chr4:36539751 0.00E+00 transposed
Cco03g0821 Cco-Chr3:8987953 Cco04g2301 Cco-Chr4:36539751 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59167 PF01852 START 3.60E-48 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2301 K09338 - csv:101210154 1639.78