Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2302 ATGATGGCATGCCCTAATCAAGTTTCATTTGGTGTGCACTGCAACCCCATGACTTCTTCTGTCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAGTCGTAAATGGACTAAGTCAACCCACCATCACAACCCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCCATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATACCTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATAGGAAGCTTTGTAGTGGAAGGGGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTAGTGTGCTGA 801 43.82 MMACPNQVSFGVHCNPMTSSVHDYSDNGEADEQQKYSGSQNHSSSVVNGLSQPTITTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPHDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFIGSFVVEGDGVDKRKLPEHPFFLKKPEHLLGLVC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36553776 36559397 - CcPI632755_04g023020.1 Cco04g2302 177527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2302 266 Gene3D - 127 188 - -
Cco04g2302 266 ProSiteProfiles NF-YA/HAP2 family profile. 127 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2302 266 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 196 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco04g2302 266 MobiDBLite consensus disorder prediction 31 66 - -
Cco04g2302 266 SMART cbf3 126 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2302 266 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 129 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2302 266 ProSitePatterns NF-YA/HAP2 subunit signature. 132 152 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cco04g2302 266 PRINTS CCAAT-binding transcription factor subunit B signature 161 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2302 266 PRINTS CCAAT-binding transcription factor subunit B signature 130 152 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2302 266 MobiDBLite consensus disorder prediction 22 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2469 Cco-Chr2:37050865 Cco04g2302 Cco-Chr4:36553776 7.10E-28 dispersed
Cco04g2302 Cco-Chr4:36553776 Cco11g0180 Cco-Chr11:1794193 1.90E-26 dispersed
Cco04g2302 Cco-Chr4:36553776 Cco09g0394 Cco-Chr9:3582610 3.40E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59168 PF02045 CBFB_NFYA 6.60E-26 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2302 K08064 - csv:101205549 323.168