Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g2302 | ATGATGGCATGCCCTAATCAAGTTTCATTTGGTGTGCACTGCAACCCCATGACTTCTTCTGTCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAGTCGTAAATGGACTAAGTCAACCCACCATCACAACCCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCCATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATACCTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATAGGAAGCTTTGTAGTGGAAGGGGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTAGTGTGCTGA | 801 | 43.82 | MMACPNQVSFGVHCNPMTSSVHDYSDNGEADEQQKYSGSQNHSSSVVNGLSQPTITTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPHDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFIGSFVVEGDGVDKRKLPEHPFFLKKPEHLLGLVC | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 36553776 | 36559397 | - | CcPI632755_04g023020.1 | Cco04g2302 | 177527 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g2302 | 266 | Gene3D | - | 127 | 188 | - | - | |
Cco04g2302 | 266 | ProSiteProfiles | NF-YA/HAP2 family profile. | 127 | 187 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g2302 | 266 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 25 | 196 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cco04g2302 | 266 | MobiDBLite | consensus disorder prediction | 31 | 66 | - | - | |
Cco04g2302 | 266 | SMART | cbf3 | 126 | 187 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g2302 | 266 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 129 | 184 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g2302 | 266 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 132 | 152 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Cco04g2302 | 266 | PRINTS | CCAAT-binding transcription factor subunit B signature | 161 | 184 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g2302 | 266 | PRINTS | CCAAT-binding transcription factor subunit B signature | 130 | 152 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g2302 | 266 | MobiDBLite | consensus disorder prediction | 22 | 68 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2469 | Cco-Chr2:37050865 | Cco04g2302 | Cco-Chr4:36553776 | 7.10E-28 | dispersed | |
Cco04g2302 | Cco-Chr4:36553776 | Cco11g0180 | Cco-Chr11:1794193 | 1.90E-26 | dispersed | |
Cco04g2302 | Cco-Chr4:36553776 | Cco09g0394 | Cco-Chr9:3582610 | 3.40E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59168 | PF02045 | CBFB_NFYA | 6.60E-26 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g2302 | K08064 | - | csv:101205549 | 323.168 |