Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2302 ATGATGGCATGCCCTAATCAAGTTTCATTTGGTGTGCACTGCAACCCCATGACTTCTTCTGTCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAGTCGTAAATGGACTAAGTCAACCCACCATCACAACCCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCCATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATACCTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATAGGAAGCTTTGTAGTGGAAGGGGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTAGTGTGCTGA 801 43.82 MMACPNQVSFGVHCNPMTSSVHDYSDNGEADEQQKYSGSQNHSSSVVNGLSQPTITTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPHDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFIGSFVVEGDGVDKRKLPEHPFFLKKPEHLLGLVC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36553776 36559397 - CcPI632755_04g023020.1 Cco04g2302 177527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2302 266 Gene3D - 127 188 - -
Cco04g2302 266 ProSiteProfiles NF-YA/HAP2 family profile. 127 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2302 266 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 196 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco04g2302 266 MobiDBLite consensus disorder prediction 31 66 - -
Cco04g2302 266 SMART cbf3 126 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2302 266 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 129 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2302 266 ProSitePatterns NF-YA/HAP2 subunit signature. 132 152 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cco04g2302 266 PRINTS CCAAT-binding transcription factor subunit B signature 161 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2302 266 PRINTS CCAAT-binding transcription factor subunit B signature 130 152 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g2302 266 MobiDBLite consensus disorder prediction 22 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2302 K08064 - - csv:101205549 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2469 Cco-Chr2:37050865 Cco04g2302 Cco-Chr4:36553776 7.10E-28 dispersed
Cco04g2302 Cco-Chr4:36553776 Cco11g0180 Cco-Chr11:1794193 1.90E-26 dispersed
Cco04g2302 Cco-Chr4:36553776 Cco09g0394 Cco-Chr9:3582610 3.40E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco02g2469 . 1 254 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 8.3e-54 207.6
Cco02g2469 . 87 324 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 1.3e-47 187.2
Cco03g1365 . 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 61.4 5.5e-46 181.8
Cco04g2302 . 78 196 CCAAT-HAP2 Transcription Factor Family AT2G34720 66.7 6.6e-38 154.1
Cco04g2302 . 17 193 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.8 6.2e-48 187.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59168 PF02045 CBFB_NFYA 6.60E-26 No_clan Cco TF