Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2303 ATGAATAATCGCACACTGGAACTTGGGAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTCATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTCGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGACGCCATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCAGATGCTACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAGCTTTTCTTCAAAGATCATGAACAGTTTTCGTTCAAATCCTTCACAAAAATCACAATCGCAGGAAGGTATGGTAGAGTATATTGGATTATTGAAGGTCAAAGTGATTAAAGGAACAAACTTAGCTATCAGGGATATGATGTCTAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAAGGTTTTGGAACCATAAAGTTGCAAGTATACGATTATGACACATTTTCAGCAGACGACATAATGGGAGAAGCAGAGATTGATCTCCAGCCCTTGATAACATCCGCCATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCGCATGATAACGCTCTCATAGCCGATAGCACTGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTTGAATGGATGGCTCTTGAACAATAG 1002 40.42 MNNRTLELGRPGSGKRRLRDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNPSQKSQSQEGMVEYIGLLKVKVIKGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGTIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIADSTVNIVDGKVKQEISLKLQNVESGELDLELEWMALEQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36568251 36572023 + CcPI632755_04g023030.1 Cco04g2303 177528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2303 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cco04g2303 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Cco04g2303 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cco04g2303 333 Gene3D Arf GTPase activating protein 6 135 IPR038508 -
Cco04g2303 333 ProSiteProfiles C2 domain profile. 159 274 IPR000008 -
Cco04g2303 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Cco04g2303 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cco04g2303 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Cco04g2303 333 SMART C2_3c 178 273 IPR000008 -
Cco04g2303 333 CDD ArfGap 27 124 - -
Cco04g2303 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cco04g2303 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cco04g2303 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Cco04g2303 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 321 IPR035892 -
Cco04g2303 333 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cco04g2303 333 CDD C2_ArfGAP 176 320 - -
Cco04g2303 333 Gene3D C2 domain 174 333 IPR035892 -
Cco04g2303 333 Pfam C2 domain 177 265 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1624 Cco-Chr1:28927970 Cco04g2303 Cco-Chr4:36568251 2.10E-23 dispersed
Cco04g2303 Cco-Chr4:36568251 Cco05g2942 Cco-Chr5:36885713 6.30E-88 dispersed
Cco03g0822 Cco-Chr3:8999068 Cco04g2303 Cco-Chr4:36568251 1.90E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2303 K12486 - csv:101218116 639.032