Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g2303 | ATGAATAATCGCACACTGGAACTTGGGAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTCATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTCGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGACGCCATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCAGATGCTACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAGCTTTTCTTCAAAGATCATGAACAGTTTTCGTTCAAATCCTTCACAAAAATCACAATCGCAGGAAGGTATGGTAGAGTATATTGGATTATTGAAGGTCAAAGTGATTAAAGGAACAAACTTAGCTATCAGGGATATGATGTCTAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAAGGTTTTGGAACCATAAAGTTGCAAGTATACGATTATGACACATTTTCAGCAGACGACATAATGGGAGAAGCAGAGATTGATCTCCAGCCCTTGATAACATCCGCCATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCGCATGATAACGCTCTCATAGCCGATAGCACTGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTTGAATGGATGGCTCTTGAACAATAG | 1002 | 40.42 | MNNRTLELGRPGSGKRRLRDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNPSQKSQSQEGMVEYIGLLKVKVIKGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGTIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIADSTVNIVDGKVKQEISLKLQNVESGELDLELEWMALEQ | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 36568251 | 36572023 | + | CcPI632755_04g023030.1 | Cco04g2303 | 177528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g2303 | 333 | PRINTS | HIV Rev interacting protein signature | 67 | 88 | IPR001164 | GO:0005096(InterPro) | |
Cco04g2303 | 333 | PRINTS | HIV Rev interacting protein signature | 46 | 63 | IPR001164 | GO:0005096(InterPro) | |
Cco04g2303 | 333 | PRINTS | HIV Rev interacting protein signature | 27 | 46 | IPR001164 | GO:0005096(InterPro) | |
Cco04g2303 | 333 | Gene3D | Arf GTPase activating protein | 6 | 135 | IPR038508 | - | |
Cco04g2303 | 333 | ProSiteProfiles | C2 domain profile. | 159 | 274 | IPR000008 | - | |
Cco04g2303 | 333 | SMART | arf_gap_3 | 15 | 137 | IPR001164 | GO:0005096(InterPro) | |
Cco04g2303 | 333 | Pfam | Putative GTPase activating protein for Arf | 16 | 131 | IPR001164 | GO:0005096(InterPro) | |
Cco04g2303 | 333 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 15 | 143 | IPR001164 | GO:0005096(InterPro) | |
Cco04g2303 | 333 | SMART | C2_3c | 178 | 273 | IPR000008 | - | |
Cco04g2303 | 333 | CDD | ArfGap | 27 | 124 | - | - | |
Cco04g2303 | 333 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 2 | 333 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Cco04g2303 | 333 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 15 | 132 | IPR037278 | - | |
Cco04g2303 | 333 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 175 | 333 | - | - | |
Cco04g2303 | 333 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 177 | 321 | IPR035892 | - | |
Cco04g2303 | 333 | FunFam | Arf-GAP with dual PH domain-containing protein 1 | 10 | 138 | - | - | |
Cco04g2303 | 333 | CDD | C2_ArfGAP | 176 | 320 | - | - | |
Cco04g2303 | 333 | Gene3D | C2 domain | 174 | 333 | IPR035892 | - | |
Cco04g2303 | 333 | Pfam | C2 domain | 177 | 265 | IPR000008 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1624 | Cco-Chr1:28927970 | Cco04g2303 | Cco-Chr4:36568251 | 2.10E-23 | dispersed | |
Cco04g2303 | Cco-Chr4:36568251 | Cco05g2942 | Cco-Chr5:36885713 | 6.30E-88 | dispersed | |
Cco03g0822 | Cco-Chr3:8999068 | Cco04g2303 | Cco-Chr4:36568251 | 1.90E-140 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g2303 | K12486 | - | csv:101218116 | 639.032 |