Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2309 ATGGGGAAGTTTCTAATCCGGAAATGCTTGATTTCATTACTACTTCTGATAATTTCTGAGTATCTACAAACTGGAGATGCCGAATCCAATTCTCTTTTCATCAACTGCGGTTCAAGTTCAAATGAAACTGCTGATGGGAGGAAATGGATTGGCGACCTGACTTCAGAAGGGAACTTTTCTGTGGGCAATCTTGGAGCTACTATTGATGCCTCCACAGCCACTTTGAACGGCGATTCTGTCTTTGAGCCGCTGTATAAAACTGCTCGGATATTTACTAATTCCCTGAACTATACTTTTAAAGGTTTTCGGGGTAATCATGTTGTTCGGCTTCATTTCTGCCCCTTTCCTTTTGAGAATCTCAATGTGAACGAGTCATCATTTTCTGTCTCAGCCAATGGTCTTAGATTAGTTTCAGAGTTCAGCGTTCCCAATGAGATTGCATATAAGAATATGGAGTTTCAGCGTTCTGGGGTCAATTCAAGTCCATTCTCTTTGATTAAAGAGTTCATTATTTCTATCAATTCGGAAGTATTTGTTCTTGAGTTTTCCCCTTCTGGGGGATCATTTGGGTTCGTTAATGCTATTGAAATTGTTCCCCTGGTGGATGAGCTTTTTGGAGGTTCCATTGATAAGGTGGGTGGAAGTGCTGTTAGTTTGAATGTGAGTGAAAGGGGAACTGAGACTATGTACAGGTTGAATGTTGGAGGGCCTGTGATCAAGCCCACTCAAGATTCAGATCTTTGGAGAATGTGGGAAGTGGACTCGAGTTATATGATTACAGCAAATGCTGGGTCTGAGATACATAACAGTTCTAATGTAACATATGCTTCCACGAATGACTCCATTGTAGCTCCTCTCCCTGTGTATGAAACAGCCAGAACGATGTCTGAGACTGAAGTGCTCGAGAAAAGGTTCAACATGTCGTGGAAATTCGAAATTCATCCCGGTTTTGAGTATTTGATCAGATTGCATTTCTGTGAGCTGCTGTATGAGAAGGCAAGAGAGAGGGTTTTCAAGATTTACATAAACAACAGGACTGCAGTTGAGAGTTTTGATGTGTTTGTACGAGCGGGGGGAATGAACAGAGCATATCATGTGGATTTCCTTGAACCAATATCGTCCAAAATCAACACCCTTTGGATTCAATTAGGCCCTGATACGGCTGCAGGTGCTGCAGGAACAGATGCTCTCTTGAATGGTCTGGAAATTTTCAAGTTGAGTCAAAACGGGAATCTTGCGTACATTGACAGGTTTAATGCCTTGGAGGAATCGACGGGAAACTCGAAATCTCAAATTCTTTGGATAGGCATTGGAGCAGGTTTAGCATCTGTTGTTTTCCTTGCTGTTATTACCATTCTCATCATCTATTTCTGCAGAATCCGGAGAAGGAATTTCACTAAGAAGAACTCTTCTAGGTGGAGAGCAGGATCCAGTCATGAGGCCACTGTCACCAACACTTATGCCAGAGGGTCCTCGGGGGGAGGCCAAAGTGTATTTGGGACCTTGCCATCTGTCAGAGTTGGCAAATGGTTTACATTAGCAGAGATTCTTGCAGCGACAGATAACTTCGATGAAGCTCTGATGATCGGAGTTGGCGGTTTTGGTAAGGTCTACAGGGGGGAGATTGATGATGGTACACTTGTGGCAATCAAGAGAGCAAATCCACAGTCTCAGCAGGGACTTGCGGAGTTCGAGACCGAAATCGAAATGCTTTCTAAACTTAGGCATAGACATCTGGTCTCCATGATTGGCTTTTGCGACGAGCAAAAGGAAATGATCTTGGTTTACGAATATATGGCGAATGGCACTCTTAGAAGCCATCTCTTTGGGAGTAATCTCCCACCTTTGACATGGAAGCAACGATTGGAAGTGTGCATTGGTGCAGCCAGGGGACTCCATTACCTTCACACAGGAGCTGAGAGAGGAATAATCCACAGAGATGTGAAGACGACCAACATACTCTTGGATGAAAACTTTGTTGCAAAAATGTCTGATTTTGGTCTTTCAAAAACAGGTCCTGCTTTGGATCATACCCATGTTAGTACTGCAGTTAAGGGCAGCTTCGGCTACCTTGATCCGGAGTATTTCAGGCGCCAGCAGCTGAGTGAAAAATCTGATGTCTATTCTTTTGGCGTGGTGTTGTTAGAAGTTGTTTGTGCACGAGCTGTTATAAACCCAAGTTTGCCCAAGGATCAGATAAATCTTGCAGAATGGGCAATGAAATGGCAACGCAAAAAGTTGCTGCACTCCATCATAGACCCACAGCTCAAAGACAATTATTGTCCCGAGTCTCTGAAAACATTTGGAGAGATAGCAGAAAAATGCCTTGCTGATGAAGGGAAGATTCGTCCAACAATGGGGGAAGTTCTATGGCACCTAGAATATGCTCTGCAACTCCATGATGCTTGGATCCGCACTAATGATGCTCAAAGTTCATGCACAGTAAACTTAGAAGGAGCACAAGCTGAGGAACAGAGGCTAGATCTTGATGGGGAAGAAAGGCTCCAACATGAACGCTTCAACTCCAACTGA 2532 43.64 MGKFLIRKCLISLLLLIISEYLQTGDAESNSLFINCGSSSNETADGRKWIGDLTSEGNFSVGNLGATIDASTATLNGDSVFEPLYKTARIFTNSLNYTFKGFRGNHVVRLHFCPFPFENLNVNESSFSVSANGLRLVSEFSVPNEIAYKNMEFQRSGVNSSPFSLIKEFIISINSEVFVLEFSPSGGSFGFVNAIEIVPLVDELFGGSIDKVGGSAVSLNVSERGTETMYRLNVGGPVIKPTQDSDLWRMWEVDSSYMITANAGSEIHNSSNVTYASTNDSIVAPLPVYETARTMSETEVLEKRFNMSWKFEIHPGFEYLIRLHFCELLYEKARERVFKIYINNRTAVESFDVFVRAGGMNRAYHVDFLEPISSKINTLWIQLGPDTAAGAAGTDALLNGLEIFKLSQNGNLAYIDRFNALEESTGNSKSQILWIGIGAGLASVVFLAVITILIIYFCRIRRRNFTKKNSSRWRAGSSHEATVTNTYARGSSGGGQSVFGTLPSVRVGKWFTLAEILAATDNFDEALMIGVGGFGKVYRGEIDDGTLVAIKRANPQSQQGLAEFETEIEMLSKLRHRHLVSMIGFCDEQKEMILVYEYMANGTLRSHLFGSNLPPLTWKQRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPSLPKDQINLAEWAMKWQRKKLLHSIIDPQLKDNYCPESLKTFGEIAEKCLADEGKIRPTMGEVLWHLEYALQLHDAWIRTNDAQSSCTVNLEGAQAEEQRLDLDGEERLQHERFNSN 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36625562 36628093 + CcPI632755_04g023090.1 Cco04g2309 177534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2309 843 Pfam Malectin-like domain 34 405 IPR024788 -
Cco04g2309 843 Pfam Protein tyrosine and serine/threonine kinase 528 790 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2309 843 FunFam Receptor-like protein kinase FERONIA 225 408 - -
Cco04g2309 843 Gene3D - 27 200 - -
Cco04g2309 843 Gene3D - 224 408 - -
Cco04g2309 843 FunFam receptor-like protein kinase FERONIA 492 598 - -
Cco04g2309 843 CDD STKc_IRAK 529 794 - -
Cco04g2309 843 SMART serkin_6 523 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2309 843 Gene3D Phosphorylase Kinase; domain 1 501 598 - -
Cco04g2309 843 ProSiteProfiles Protein kinase domain profile. 523 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2309 843 FunFam FERONIA receptor-like kinase 31 201 - -
Cco04g2309 843 SUPERFAMILY Protein kinase-like (PK-like) 502 795 IPR011009 -
Cco04g2309 843 Gene3D Transferase(Phosphotransferase) domain 1 599 817 - -
Cco04g2309 843 FunFam Receptor-like protein kinase FERONIA 599 813 - -
Cco04g2309 843 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524(InterPro)
Cco04g2309 843 PANTHER OS07G0166700 PROTEIN 511 800 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Cco04g2309 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0828 Cco-Chr1:8725321 Cco04g2309 Cco-Chr4:36625562 1.60E-53 dispersed
Cco04g2309 Cco-Chr4:36625562 Cco11g1892 Cco-Chr11:31631667 2.00E-191 dispersed
Cco04g2309 Cco-Chr4:36625562 Cco04g0807 Cco-Chr4:23394568 4.40E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86801 PF12819 Malectin_like 1.10E-30 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2309 - - - 0.0