Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2310 ATGGAAGCGGTGGCAGACACCAAAGCAAAGATCTTGCTAACGCTAACCACGTGGAAATCAAAGCGAGTAAAAATCAAGCTCCCCAAAGAAGCAAAGGAAGAAAATCAAAAAACGATCAACAACAACAACGAGGATGAACGAGAGGAGAATTTGGAAGATGAGGGAGGCTCGTCACAAATAAAACAACGAGAAGTTATTTATGGATCTCATCTAGTACAAGGCAAAATGAATCATGGAATGGAAGACTATATCGTTACCGAAGAACGACATGTCGACGACCACGTGCTGGGACTATTTGCAATATTTGATGGCCACTCCGGTCGCGATGTCACAGAGTACTTGCAGAGCCATCTGTTTGATAACATCCTAAGCCAGTCTGATTTCTGGGAAGACCCTGAAGGAGCAATCAGGAGAGCATATAAAGCAACAGATGAGGAGATTTTAGCTAAAAAAGTGGGAAAGAGAGGAGGTTCAACAGCAGTTACAGCTATACTAATAGATGGGCAGAAGCTAATCGTCGCACACGTAGGCGACTCACGGGCGGTGATATGCAGGAATGGCTCAGCAAAACCAATTACGGTCGATCACGAACCAGAGGAGGAGAAGGAGCTTGTTGAGAGCCGAGGCGGATTTGTTGTACAAATGCCAGGAAGTGTGCCACGGGTTGATGGTCAGCTAGCAATGTCAAGGGCATTTGGTGATGCAAGGCTGAAAGAACACATTACTTCAGAACCAGATATCAGGATTCTCACAATTGACAATGAGACTGAGTTCACCATTTTGGCCAGTGATGGCCTCTGGAAGGTAATGTCAAACCAGGAGGCTTGTGATTGCATCAGAGAAATGGGAATGGATCCTCAAAAGGCTTCAGAGAAATTGATTAAAGAGGCATTGTCTAAAATGAGCTACGATGACATTTCCTGCGTTGTAGTTACCTTCCACTGA 945 44.87 MEAVADTKAKILLTLTTWKSKRVKIKLPKEAKEENQKTINNNNEDEREENLEDEGGSSQIKQREVIYGSHLVQGKMNHGMEDYIVTEERHVDDHVLGLFAIFDGHSGRDVTEYLQSHLFDNILSQSDFWEDPEGAIRRAYKATDEEILAKKVGKRGGSTAVTAILIDGQKLIVAHVGDSRAVICRNGSAKPITVDHEPEEEKELVESRGGFVVQMPGSVPRVDGQLAMSRAFGDARLKEHITSEPDIRILTIDNETEFTILASDGLWKVMSNQEACDCIREMGMDPQKASEKLIKEALSKMSYDDISCVVVTFH 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36628561 36631049 - CcPI632755_04g023100.1 Cco04g2310 177535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2310 314 SMART PP2C_SIG_2 71 313 IPR001932 -
Cco04g2310 314 MobiDBLite consensus disorder prediction 29 45 - -
Cco04g2310 314 PANTHER PROTEIN PHOSPHATASE 45 311 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco04g2310 314 SUPERFAMILY PP2C-like 65 314 IPR036457 -
Cco04g2310 314 Gene3D - 37 314 IPR036457 -
Cco04g2310 314 SMART PP2C_4 62 311 IPR001932 -
Cco04g2310 314 MobiDBLite consensus disorder prediction 29 59 - -
Cco04g2310 314 ProSiteProfiles PPM-type phosphatase domain profile. 66 313 IPR001932 -
Cco04g2310 314 FunFam Probable protein phosphatase 2C 39 55 314 - -
Cco04g2310 314 Coils Coil 29 49 - -
Cco04g2310 314 Pfam Protein phosphatase 2C 77 305 IPR001932 -
Cco04g2310 314 CDD PP2Cc 65 313 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2310 Cco-Chr4:36628561 Cco11g1844 Cco-Chr11:31126697 1.80E-84 dispersed
Cco04g2310 Cco-Chr4:36628561 Cco07g0249 Cco-Chr7:2544210 4.30E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2310 K14803 - csv:101211141 480.715