Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g2328 | ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGGTGATTTGACTGATATTGTGAGAGGAGGAAGATCAAGATCAAGATCAACAACAAGAAGCTCCACTTCTAATTGCAAAACGGAATTGGGTGATCAAGATGAAGATCAAGATTCTCCCTTTTATTCTTCATCACAAGATAACAATTACAATCCTCAGTGGAGTAGCTCCCAATTTTCATCACAACTACTACTACTACAAGATCATCATCATCAATACAGTTTTGGGGATCCATTTTGTAGTACTGTTGCTGCTTCACTTGATCTTCATCGAGAGCTGGATAATACTAATAATAATAATTTTTTCAATGGAATTACTACTACTACTACTACTACTTCTACTCAAGATGAGCTTATCAAAACGCCTTCTTCTTCCAATATTTTCTCACGTATGCTTCAGATCTCTCCTTCACCCGACAAATTCCCAACCATTTCTTCACTTAATTCCTCTTCTAATTTCCTAATTCCCAATCATTCTCTTAATTCTCCCACCACTCCACATTCTGATCACCTTCATCATTTTCTTCATCATAATGATAATAATCCCTCCCCATCCGCCCTTCACGTCTCTTCTCCTCGCAATCCACCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAAGTGGTTTGTGTTCCAGCTCCAGTGGCTGCTAGTAGTAGACCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAGGGATGTTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGCTGGTGATTACTTACACATCTGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCTTCAAGGTCCCAACAATCCAAAAACAACAACATTACTACTACTACTTCTTCAACTTCAACAACAACACCAACACCCAATTCTTCAAAACTCTCTCAAGATCATCATCACAAAAATAAGGAAGAAAAAGAAGAACATCAAGATCAAAACAATGGAACATTATTATCAGCTGCAGCAGCAACAACATCAAATAACAATAATAATGTTAAGGAAGAGGAAACTGAGAACCATCATCATCAATTGATGATGAGTGAAGGGTTTGATGAAGATCATGATTTCTTTGCAGATTTGGAAGAATTACAAACAGACCCTTTAACTCTGTTGTTCACTACACAACAACCCCTTAAATTAGACCAAATCAAAGAATCAGCCACCACCGCCCCCACTACTACTACTGGTTGCTTACACGACTTCGTTCCATTCAATAATCTCTTTGATTGGCCACCACCTCCTCTAAACAACAATTCAACTCCATTTTATGAACAACCACCACCTACTACTCCTACCAACAGAGGTTTTTATTAA | 1446 | 39.0 | MLLLFEMENYEEGDLTDIVRGGRSRSRSTTRSSTSNCKTELGDQDEDQDSPFYSSSQDNNYNPQWSSSQFSSQLLLLQDHHHQYSFGDPFCSTVAASLDLHRELDNTNNNNFFNGITTTTTTTSTQDELIKTPSSSNIFSRMLQISPSPDKFPTISSLNSSSNFLIPNHSLNSPTTPHSDHLHHFLHHNDNNPSPSALHVSSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNITTTTSSTSTTTPTPNSSKLSQDHHHKNKEEKEEHQDQNNGTLLSAAAATTSNNNNNVKEEETENHHHQLMMSEGFDEDHDFFADLEELQTDPLTLLFTTQQPLKLDQIKESATTAPTTTTGCLHDFVPFNNLFDWPPPPLNNNSTPFYEQPPPTTPTNRGFY | 481 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 36737386 | 36740427 | - | CcPI632755_04g023280.1 | Cco04g2328 | 177553 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g2328 | 481 | MobiDBLite | consensus disorder prediction | 20 | 59 | - | - | |
Cco04g2328 | 481 | FunFam | probable WRKY transcription factor 14 | 212 | 292 | - | - | |
Cco04g2328 | 481 | MobiDBLite | consensus disorder prediction | 255 | 357 | - | - | |
Cco04g2328 | 481 | SMART | WRKY_cls | 238 | 298 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g2328 | 481 | MobiDBLite | consensus disorder prediction | 175 | 217 | - | - | |
Cco04g2328 | 481 | MobiDBLite | consensus disorder prediction | 22 | 39 | - | - | |
Cco04g2328 | 481 | MobiDBLite | consensus disorder prediction | 338 | 356 | - | - | |
Cco04g2328 | 481 | SUPERFAMILY | WRKY DNA-binding domain | 237 | 299 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g2328 | 481 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 13 | 409 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
Cco04g2328 | 481 | MobiDBLite | consensus disorder prediction | 282 | 337 | - | - | |
Cco04g2328 | 481 | ProSiteProfiles | WRKY domain profile. | 233 | 299 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g2328 | 481 | Pfam | WRKY DNA -binding domain | 240 | 297 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g2328 | 481 | Gene3D | WRKY domain | 212 | 292 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g2328 | 481 | MobiDBLite | consensus disorder prediction | 462 | 481 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0969 | Cco-Chr1:11379576 | Cco04g2328 | Cco-Chr4:36737386 | 2.90E-08 | dispersed | |
Cco04g2328 | Cco-Chr4:36737386 | Cco05g0161 | Cco-Chr5:1259122 | 1.30E-38 | dispersed | |
Cco10g1135 | Cco-Chr10:23779848 | Cco04g2328 | Cco-Chr4:36737386 | 3.30E-26 | transposed | |
Cco03g0867 | Cco-Chr3:10274534 | Cco04g2328 | Cco-Chr4:36737386 | 1.50E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59169 | PF03106 | WRKY | 2.70E-25 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g2328 | - | - | - | 0.0 |