Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2328 ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGGTGATTTGACTGATATTGTGAGAGGAGGAAGATCAAGATCAAGATCAACAACAAGAAGCTCCACTTCTAATTGCAAAACGGAATTGGGTGATCAAGATGAAGATCAAGATTCTCCCTTTTATTCTTCATCACAAGATAACAATTACAATCCTCAGTGGAGTAGCTCCCAATTTTCATCACAACTACTACTACTACAAGATCATCATCATCAATACAGTTTTGGGGATCCATTTTGTAGTACTGTTGCTGCTTCACTTGATCTTCATCGAGAGCTGGATAATACTAATAATAATAATTTTTTCAATGGAATTACTACTACTACTACTACTACTTCTACTCAAGATGAGCTTATCAAAACGCCTTCTTCTTCCAATATTTTCTCACGTATGCTTCAGATCTCTCCTTCACCCGACAAATTCCCAACCATTTCTTCACTTAATTCCTCTTCTAATTTCCTAATTCCCAATCATTCTCTTAATTCTCCCACCACTCCACATTCTGATCACCTTCATCATTTTCTTCATCATAATGATAATAATCCCTCCCCATCCGCCCTTCACGTCTCTTCTCCTCGCAATCCACCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAAGTGGTTTGTGTTCCAGCTCCAGTGGCTGCTAGTAGTAGACCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAGGGATGTTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGCTGGTGATTACTTACACATCTGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCTTCAAGGTCCCAACAATCCAAAAACAACAACATTACTACTACTACTTCTTCAACTTCAACAACAACACCAACACCCAATTCTTCAAAACTCTCTCAAGATCATCATCACAAAAATAAGGAAGAAAAAGAAGAACATCAAGATCAAAACAATGGAACATTATTATCAGCTGCAGCAGCAACAACATCAAATAACAATAATAATGTTAAGGAAGAGGAAACTGAGAACCATCATCATCAATTGATGATGAGTGAAGGGTTTGATGAAGATCATGATTTCTTTGCAGATTTGGAAGAATTACAAACAGACCCTTTAACTCTGTTGTTCACTACACAACAACCCCTTAAATTAGACCAAATCAAAGAATCAGCCACCACCGCCCCCACTACTACTACTGGTTGCTTACACGACTTCGTTCCATTCAATAATCTCTTTGATTGGCCACCACCTCCTCTAAACAACAATTCAACTCCATTTTATGAACAACCACCACCTACTACTCCTACCAACAGAGGTTTTTATTAA 1446 39.0 MLLLFEMENYEEGDLTDIVRGGRSRSRSTTRSSTSNCKTELGDQDEDQDSPFYSSSQDNNYNPQWSSSQFSSQLLLLQDHHHQYSFGDPFCSTVAASLDLHRELDNTNNNNFFNGITTTTTTTSTQDELIKTPSSSNIFSRMLQISPSPDKFPTISSLNSSSNFLIPNHSLNSPTTPHSDHLHHFLHHNDNNPSPSALHVSSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNITTTTSSTSTTTPTPNSSKLSQDHHHKNKEEKEEHQDQNNGTLLSAAAATTSNNNNNVKEEETENHHHQLMMSEGFDEDHDFFADLEELQTDPLTLLFTTQQPLKLDQIKESATTAPTTTTGCLHDFVPFNNLFDWPPPPLNNNSTPFYEQPPPTTPTNRGFY 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36737386 36740427 - CcPI632755_04g023280.1 Cco04g2328 177553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2328 481 MobiDBLite consensus disorder prediction 20 59 - -
Cco04g2328 481 FunFam probable WRKY transcription factor 14 212 292 - -
Cco04g2328 481 MobiDBLite consensus disorder prediction 255 357 - -
Cco04g2328 481 SMART WRKY_cls 238 298 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g2328 481 MobiDBLite consensus disorder prediction 175 217 - -
Cco04g2328 481 MobiDBLite consensus disorder prediction 22 39 - -
Cco04g2328 481 MobiDBLite consensus disorder prediction 338 356 - -
Cco04g2328 481 SUPERFAMILY WRKY DNA-binding domain 237 299 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g2328 481 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 409 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cco04g2328 481 MobiDBLite consensus disorder prediction 282 337 - -
Cco04g2328 481 ProSiteProfiles WRKY domain profile. 233 299 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g2328 481 Pfam WRKY DNA -binding domain 240 297 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g2328 481 Gene3D WRKY domain 212 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g2328 481 MobiDBLite consensus disorder prediction 462 481 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0969 Cco-Chr1:11379576 Cco04g2328 Cco-Chr4:36737386 2.90E-08 dispersed
Cco04g2328 Cco-Chr4:36737386 Cco05g0161 Cco-Chr5:1259122 1.30E-38 dispersed
Cco10g1135 Cco-Chr10:23779848 Cco04g2328 Cco-Chr4:36737386 3.30E-26 transposed
Cco03g0867 Cco-Chr3:10274534 Cco04g2328 Cco-Chr4:36737386 1.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59169 PF03106 WRKY 2.70E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2328 - - - 0.0