Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2329 ATGGATTCAGCAAAGAGTTGGTTTCAGAAGTTCCAAAATAGAGTAAAGAAGGAAACTGTAAGTGACAATGAGGTTCAAGATGTACCCTCAAGTGCGACGAAGCAGAAAGTTGAGGTTGCCAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCTGATGTTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAAACAGAATACATGCGCCTTCGTAGACATAAAATGGGTGTTGATGACTTTGAACTTTTGACAATTATTGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTTAAAGCTGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGATGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACCCTATTAATGCGCAAGGATATTTTGACAGAGGATGAGGCCAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATCCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACTGAGGAAGAAAAAGTAGTGGGGAAGAATGTCAGATCTTCCACCGAAAATGATAGTCAAATTAGTGCATCGAAACGGACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGAACATTGGCTTATTCAGCTGTTGGAACGCCGGACTATATTGCCCCAGAAGTTTTATTGAGGAAAGGATATGGAATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTCCCACCTTTCTATTCTGATGATCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACTCATTTGAGATTCCCAACAGAAGCAAAACTGTCCATCGAGGCCAAAGATCTTATTTGCAAACTTCTATGCAATGTTGAGCAAAGGATTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGGTACACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATTCCAGAGATTCAGGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGCCCTTTGAGAAAGAAGCTTTCACCCAAGGATGTGAACTTTGTTGGTTATACGTACAAGAATTTCGAAATTGTCAACGAACACCACTTGTCAGGCATTACTGAGATGAGGAAAAAGCCTATCAAGACCAAGAGACCATCTGTTACGACTCTATTTGCCACAGCAGATTCTTCGGAGCAGACTGTTCAAAGAAGTTATCCTAATCATTTGCCAACCCATCCCGAAGTCTCAGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCGCTGCAACAGCCGAAACGATTCTGCAATCTTTATTCACAATCACAGATTCTCACCCGGCTAGTTAGCCTTCTTGTGGGTGCTTTGGAAACCGACTATCAAAGTAGTTATCAAAATAACCATTACTTTGAAGATCCAATGGAATGCTATTTGTTGGATTCTCAACTCCAATACCTTTAA 1800 40.83 MDSAKSWFQKFQNRVKKETVSDNEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADVSEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDDDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEEEKVVGKNVRSSTENDSQISASKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIQDELDTRNFEKYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPIKTKRPSVTTLFATADSSEQTVQRSYPNHLPTHPEVSESPDPSPRSTGSLQQPKRFCNLYSQSQILTRLVSLLVGALETDYQSSYQNNHYFEDPMECYLLDSQLQYL 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36752094 36760194 - CcPI632755_04g023290.1 Cco04g2329 177554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2329 599 FunFam Non-specific serine/threonine protein kinase 77 189 - -
Cco04g2329 599 SMART pkinase_C_6 409 473 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2329 599 Pfam Protein kinase C terminal domain 427 471 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2329 599 SUPERFAMILY Protein kinase-like (PK-like) 87 455 IPR011009 -
Cco04g2329 599 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 476 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cco04g2329 599 CDD MobB_NDR_LATS-like 40 101 - -
Cco04g2329 599 MobiDBLite consensus disorder prediction 504 543 - -
Cco04g2329 599 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524(InterPro)
Cco04g2329 599 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2329 599 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Cco04g2329 599 SMART serkin_6 106 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2329 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2329 599 MobiDBLite consensus disorder prediction 504 524 - -
Cco04g2329 599 ProSiteProfiles Protein kinase domain profile. 106 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2329 599 CDD STKc_NDR_like 104 472 - -
Cco04g2329 599 FunFam Non-specific serine/threonine protein kinase 190 257 - -
Cco04g2329 599 Pfam Protein kinase domain 107 259 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2329 599 Pfam Protein kinase domain 305 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2329 599 Gene3D Transferase(Phosphotransferase) domain 1 192 425 - -
Cco04g2329 599 Gene3D Phosphorylase Kinase; domain 1 97 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1590 Cco-Chr3:30519130 Cco04g2329 Cco-Chr4:36752094 1.30E-178 dispersed
Cco04g2329 Cco-Chr4:36752094 Cco06g0736 Cco-Chr6:8388269 4.10E-223 dispersed
Cco04g2329 Cco-Chr4:36752094 Cco05g2046 Cco-Chr5:29528296 1.50E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86802 PF00069 Pkinase 2.90E-64 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2329 K08790 - csv:101208438 1067.76