Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2337 ATGGATATTATTTACTGTGCACGTCTACTATGTGTTGTTGTCTTTGGGATGTTTCTATGCGCATCTTGTCTTGACGAATTCGGTGATTCAACAGCTGTGTACATTGTAACTCTCAAGGAACCTCCTTCCACTACTCATTACTATGGTCAGCTTAGACAAAATACCACTTCTTTTAGGCTTAATACTTCTGGTGGATTAAGCATCCACCAACCAAGAAACATATCGAGAAAGCATCGAAGATATAGATCTTACATAGCCCGAGTTCATGATTCATTGTTGAAGAAGGTCTTGAAGGGGGAAAAATATCTGAAGCTGTACAGTTACCATTTCTTGATCAATGGATTTGCTGTGCTTGTTACCGAAGAACAGGCAAGTAAACTTTCAAAGAGGATAGAGGTGGCAAATGTTGTCATGGATTTCTCTGTTAGAACTGCTACGACCCACACTCCACAGTTCTTGGGCCTACCGCAGGGAGCTTGGTCTCAAGATGGTGGCTTTGAGTCTGCTGGAGCTGGGATTGTGATAGGGTTCATTGACACTGGCATTGATCCTTCGCACCCCAGCTTTGCTGATGATTTGACTGATAATCCGTTTCCCATTCCGGCTCACTTCTCTGGAATCTGTGAGGTAACTCCAGATTTTCCATCTGGATCTTGCAATCGGAAGCTTGTGGGAGCACGCCATTTTGCAGCATCAGCTATAACAAGGGGAATATTTAATGCATCTCAGGATTATGCATCGCCATTTGATGGTGATGGACATGGCACGCACACAGCTTCAATTGCTGCTGGAAACCATGGCATTCCAGTCATAGTTGCTGGACATCACTTTGGAAATGCCAGTGGGATGGCTCCTCGTTCACACATTGCTGTTTACAAGGCACTGTACAAAAGTTTTGGAGGTTTTGCTGCTGATGTTGTTGCTGCAGTTGATCAGGCTGCTCAGGATGGAGTGGATATAATAAGTTTATCAATCACACCGAATCGGCGTCCCCCTGGTATTGCAACATTTTTTAATCCCATAGATATGGCACTGCTCTCTGCTGTAAAGGCTGGTATATTTGTTGTGCAAGCAGCTGGCAATACTGGACCAGCACCAAAGAGCATGTCTTCCTTCAGTCCATGGATCTTTACTGTTGGTGCTGCTTCTCACGATAGAAGCTATGCTAACTCTATACACCTTGGCAATAATGTCACCATTCCGGGGGTCGGTCTTGCACCTGGAACCTATAATGACACAAAGTACAAACTAGTTGCTGCAATGCATGCACTGAACAATGACACAAACGTGTCAGAGGACATGTATGTGGGCGAATGCCAAGACTCCAGTAACTTTGATCAGGATCTGGTCCAGGGGAACCTTCTAATATGCAGCTACTCAATCAGATTTGTGCTAGGGCTTTCAACGGTTAAACAGGCTTTACAGACGGCGAAAAACTTGAGTGCCGCTGGTGTCATTTTCTATATGGATTCTTTTGTGATAGGTTTTAGGCTCAACCCAATTCCAATGAAAATGCCTGGCATCATAATTTCATCACCAGAAGATTCCAAGATGCTTCTTCAATACTACAATTCTTCTTTGGAAGTAGATGGATTAACAAAGAAAATTTCTAAATTTGGAGCTGTTGCCAGCATATGTGGAGGATTGAAGGCAAATTATAGCTCTTCTGCCCCACAAATTATGTACTACTCTGCTAGAGGACCAGATCCAGAAGACAGTTCTCTTGATGATTCTGATATTATGAAGCCTAACTTGGTAGCTCCTGGAAATTCCATATGGGCTGCTTGGAGCTCTGTTGCCACTGACTCTATTGAATTTCTCGGTGAAAACTTCGCAATGATGTCAGGAACGAGCATGGCTGCTCCTCATATTGCAGGCCTAGCCTCACTCATAAAGCAGAAGTATCCTAATCTTAGTCCTTCAGCCATTGCATCTGCACTATCGACAACAGCTTCTCTTTACAACAAGACTGGTGGACCGATCATGGCACAGCGTGCTTATGCTAACCCTGAACAGAACCAGTCTCCAGCTACGCCTTTCGATATGGGAAGTGGTTTTGTGAATGCAACAGCAGCTCTCAACCCAGGGTTGATATTTGATTCTAGTTACGATGATTATATGTCTTTTCTTTGTGGTATCAACGGATCATCTCCTGTGGTCTTCAACTACACAGGCCAGAACTGTGGGCTATACAATTCTAGCATTACTGGAGCTGATTTGAACTTGCCCTCTGTGACGATAGCAAAACTTAACCAGTCGAGAGTAGTGCAACGAACCGTGACCAACATTGCTGGACCTGAGTTTTATAGTGTTGGTTGGAGTGCTCCTTATGGGATTTCTTTGAAGGTTTCTCCAACTCGATTTACAATCGGCAGTGGCGAGAAACAGGAGCTAACCATATTCTTCAACTCCACGATGAACAGCTCAGTTGCTAGCTTTGGTAGAATTGGACTTTTTGGGAGTGCAGGCCATATAATCAACATTCCTCTTTCGGTCATTTTGAAGATCTCATATAACAATACTACTAATTGA 2532 43.68 MDIIYCARLLCVVVFGMFLCASCLDEFGDSTAVYIVTLKEPPSTTHYYGQLRQNTTSFRLNTSGGLSIHQPRNISRKHRRYRSYIARVHDSLLKKVLKGEKYLKLYSYHFLINGFAVLVTEEQASKLSKRIEVANVVMDFSVRTATTHTPQFLGLPQGAWSQDGGFESAGAGIVIGFIDTGIDPSHPSFADDLTDNPFPIPAHFSGICEVTPDFPSGSCNRKLVGARHFAASAITRGIFNASQDYASPFDGDGHGTHTASIAAGNHGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAVDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPAPKSMSSFSPWIFTVGAASHDRSYANSIHLGNNVTIPGVGLAPGTYNDTKYKLVAAMHALNNDTNVSEDMYVGECQDSSNFDQDLVQGNLLICSYSIRFVLGLSTVKQALQTAKNLSAAGVIFYMDSFVIGFRLNPIPMKMPGIIISSPEDSKMLLQYYNSSLEVDGLTKKISKFGAVASICGGLKANYSSSAPQIMYYSARGPDPEDSSLDDSDIMKPNLVAPGNSIWAAWSSVATDSIEFLGENFAMMSGTSMAAPHIAGLASLIKQKYPNLSPSAIASALSTTASLYNKTGGPIMAQRAYANPEQNQSPATPFDMGSGFVNATAALNPGLIFDSSYDDYMSFLCGINGSSPVVFNYTGQNCGLYNSSITGADLNLPSVTIAKLNQSRVVQRTVTNIAGPEFYSVGWSAPYGISLKVSPTRFTIGSGEKQELTIFFNSTMNSSVASFGRIGLFGSAGHIINIPLSVILKISYNNTTN 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36816173 36822296 + CcPI632755_04g023370.1 Cco04g2337 177562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2337 843 Pfam Subtilase family 170 665 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco04g2337 843 SUPERFAMILY Subtilisin-like 145 697 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco04g2337 843 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 143 IPR037045 -
Cco04g2337 843 Gene3D Peptidase S8/S53 domain 172 706 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco04g2337 843 Pfam Fibronectin type-III domain 739 832 IPR041469 -
Cco04g2337 843 Pfam Peptidase inhibitor I9 33 144 IPR010259 -
Cco04g2337 843 ProSitePatterns Serine proteases, subtilase family, serine active site. 616 626 IPR023828 -
Cco04g2337 843 PRINTS Subtilisin serine protease family (S8) signature 615 631 IPR015500 -
Cco04g2337 843 PRINTS Subtilisin serine protease family (S8) signature 170 189 IPR015500 -
Cco04g2337 843 PRINTS Subtilisin serine protease family (S8) signature 250 263 IPR015500 -
Cco04g2337 843 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 93 797 IPR045051 -
Cco04g2337 843 Gene3D - 385 553 - -
Cco04g2337 843 Gene3D - 710 834 - -
Cco04g2337 843 ProSiteProfiles Serine proteases, subtilase domain profile. 150 693 - -
Cco04g2337 843 CDD PA_subtilisin_like 391 526 - -
Cco04g2337 843 CDD Peptidases_S8_3 145 652 IPR034197 -
Cco04g2337 843 FunFam Subtilisin-like protease SBT1.5 172 396 - -
Cco04g2337 843 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 175 186 IPR023827 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2337 Cco-Chr4:36816173 Cco11g1214 Cco-Chr11:24120027 2.20E-190 dispersed
Cco04g2337 Cco-Chr4:36816173 Cco05g0916 Cco-Chr5:7916287 3.90E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2337 - - - 0.0