Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2345 ATGGGGAAGAAGAAGAAGAGAGTTTCGTCTAAGGTATGGTGCTACTATTGCGACAGAGAATTCGATGACGAGAAGATATTGGTGCAGCATCAGAAGGCTAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCCGGCGGTATGGTCATCCACGTTCTTCAGGTCCACAAAGAGTCAGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAAGCAACAGATATCGAAATATACGGAATGCAAGGAATTCCTCCGGATGTCTTGGCAGCACACTATGGAGAGGAGGAGGAAGAGTCCTTGTCGAAGGTGGCCAAAGTGGAGATGCCATCAACTCAGATGGTTGGAGGTGTGGTGCCCGGATCACTGGGTATTGTATACCCTCCTCAGCCAGGTTTAGCTGCAATGCAACCTATTTATCCTTCGTCTGGACAAGCACAGCCTACTGCCTGGCCAGTTCCACCTCGTCCCCAACCTTGGTTCCCCCCAAATTCAGCCGTTTCGATTCCTCCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTTTGCAGACTGCAAGGCCTCCACTCCCAGTATCATCAACTCCTATGCTCCAGCCTTTACAGATAACGCCTCCTGGATTGACGTCAACTACACCTTCAGTTTCTGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGACCTACCCAAAGCTCTCCTTTTTCTTCATCTACACTTTCAACAAGCATTCCTTTGACCTCTGCAGCAGATATCAAGGGCTCAGTGACACATCTGGGCACCAACTCCTTTTCTACAATTGGAAATCAAGTTTCAAACTTTCCAGGTGCAATATTAAGCAATTCACATTCCTATGCCTCGGGACCAAATACAGGTGGTCCTTCTATCGGACCACCTCCTGTAATTGCGAATAAGGCTCCTACTCAACCATCAACGAATGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGATGAGTTCAATTGATGCAGCCATAGACAAACGAATCTTGGAAAGCAGGCTTGCTGGCCGAATGCCATTTTAG 1122 47.24 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGREATDIEIYGMQGIPPDVLAAHYGEEEEESLSKVAKVEMPSTQMVGGVVPGSLGIVYPPQPGLAAMQPIYPSSGQAQPTAWPVPPRPQPWFPPNSAVSIPPPAPLGYAQQPLFPLQTARPPLPVSSTPMLQPLQITPPGLTSTTPSVSVSQPLFPVVSNSHGPTQSSPFSSSTLSTSIPLTSAADIKGSVTHLGTNSFSTIGNQVSNFPGAILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPF 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36925268 36930212 - CcPI632755_04g023450.1 Cco04g2345 177570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2345 373 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cco04g2345 373 PANTHER ZINC FINGER PROTEIN 207 1 373 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cco04g2345 373 Gene3D Classic Zinc Finger 1 66 - -
Cco04g2345 373 CDD SUF4-like 13 92 - -
Cco04g2345 373 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cco04g2345 373 SMART c2h2final6 12 35 IPR013087 -
Cco04g2345 373 SMART c2h2final6 36 59 IPR013087 -
Cco04g2345 373 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677(InterPro)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59171 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2345 K27810 - csv:101206973 687.952