Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2350 ATGGCGCCGGGCCTCAGAGACCTCCAGCTCGCCCAGGTCGCCGCCGCAGACCGTCGCCCGCCGGATATTTCTGCGGCTGATGAAATTCCCGATGACCTTGAGGATGTGCGTTTGCTTGATTCCTATGAGAGGCAGGATGAGAATTTGGCCAAAATTGGGGATGGTATGAGGAGGGTTCAGGTCACAGTTTCTGGGATGACCTGCGCTGCTTGTTCTAATTCCGTGGAGGCTGCTCTGAGGGGCGTTAATGGCGTTTTGATGGCTTCTGTTGCATTGCTTCAGAACAGAGCTGACGTGGTTTTTGACCCCAACTTGATTAAGGAGGAAGACATCAAGGAAGCAATAGAAGATGCTGGATTTGAGGCTGAGATTATACCTGAAACCACTTCAGTTGGAAAGAAGTCGCATGGAACACTGGTGGGGCAATTTACCATAGGCGGTATGACATGTGCAGCATGTGTGAATTCAGTAGAAGGAATTTTAAAAGATCTTCCTGGTGTTAGAAGAGCAGTAGTTGCTTTAGCCACATCATTGGGAGAAGTTGAATATGATCCTACAATAACCAGTAAAGACGATATAGTTAACGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGCGAACAAGATAAAATTTTACTAGCAGTTGCAGGCATTGCTGGCGAGGTTGATGTACATTTTTTGGAAGTCATACTTAGCAACTTGAAAGGGGTGAAACGGTTTCTGTTTGACAGTACATCAGGAAAACTTGAAATTATTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAATTTAAACTGCATGTTACGAGCCCCTACACAAGGTTAACATCTAAAGATGTTGAAGAGGCTAATAACATGTTTCGGCTTTTTATCTCCAGTCTGTCTCTCAGTGTACTCATCTTTCTCCAACGAGTAATATGTCCTCATATTCCTTTAATCTACTCATTGCTACTCTGGCGCTGTGGGCCCTTCCTCATGGATGATTGGTTAAAGTGGGCATTAGTGACTGTTGTGCAATTTATTATTGGAAAGCGCTTTTACATTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACAAACATGGATGTCTTGGTTGCTTTGGGTACAACGGCCTCTTACGTCTATTCTGTTTGTGCACTTCTCTATGGTGCAGTCACTGGATTTTGGTCTCCTACTTATTTTGAAACAAGTGCTATGTTAATAACCTTTGTATTATTGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGCTGGTAGAACTTGCTCCTGCAACTGCTTTATTGCTTATCCGAGATAAAGGTGGGAATTTGATAGAAGAAAGGGAAATCGATGCTCTGTTAATTCAACCTGGTGATGTATTGAAGGTTCTTCCTGGTACAAAGATTCCAGCGGATGGTGTTGTTGTTTGGGGTTCAAGTTATGTTAATGAGAGTATGGTTACTGGAGAATCTATACCTGTTTTAAAGGAGGTTAACTCGCACGTTATTGGAGGTACAATTAATTTTCATGGAGCCCTTCACATTCAAGCAACAAAAGTAGGATCTGATGCAGTTTTGAACCAGATTATTAGTTTGGTTGAGACAGCTCAGATGTCTAAAGCTCCCATTCAGAAATTTGCTGACTTTGTAGCAAGCATATTTGTTCCAACCGTTGTAGCTATGGCATTGTGTACGTTATTTGGTTGGTACGTTGGAGGAATTCTTGGGGCTTATCCTGCTGAATGGCTCCCAGAAAATGGAAACTACTTTGTATTTTCCCTCATGTTTGCCATAGCAGTGGTAGTTATTGCATGTCCTTGCGCACTAGGCTTGGCCACACCAACTGCTGTCATGGTTGCTACTGGGGTTGGTGCGAGCAATGGTGTCTTGATTAAAGGAGGAGATGCTTTGGAGAGGGCCCAAAAGGTTAAGTACGTGATTTTTGATAAAACAGGCACACTAACCCAAGGGAAAGCAACCGTTACTACCGCCAAAGTATTCACTGAAATTTCTCGAGGAGATTTTCTTAAGTTGGTTGCTTCAGCAGAGGCTAGCAGTGAACACCCATTAGGAAAAGCTATAGTTGAGTATGCACGTCATTTCCATTTCTTCGATGAGCCTTCTGCGACCAAAAATGTGGAAAATCAAAGTAAAGAATCTTCTGGATGGCTTTATGATGCCACGGATTTCTCTGCATTGCCAGGCCAAGGCATCCAGTGCATTATTGAGGGAAAAAGGATTCTGGTTGGCAACAGGAAGTTGATGAATGAAAGTGGAATCTCCATAGCACCTCATGTAGATAATTTCGTTATAGAGCTTGAAGAAAGTGCAAAGACAGGCATTCTTGTTGCATGTGATGACAACTTAATTGGAGTTGTCGGAATAGCAGATCCACTGAAGCGAGAAGCTGCAGTTGTTGTTGAGGGTCTTGTAAAAATGGGAGTTTCTCCAGTGATGGTTACAGGGGATAATTGGAGAACGGCTCGAGCTGTCGCCAAAGAGCTTGGTATACAAGATGTGAGGGCAGAAGTAATGCCAGCAGGAAAGGCCGAAGTCATTCAAAACTTCCAAAAGGATGGAAGCACAGTTGCAATGGTAGGTGATGGTATCAATGACTCGCCTGCTCTAGCTGCTTCTGATATCGGAATTGCAATCGGTGCGGGAACTGATATTGCCATTGAGGCAGCCGACTTTGTCCTGATGAGAAATAATTTAGAAGACGTAATTACAGCCATTGATCTCTCAAGGAAGACTTTCAATCGGATTCGATTAAATTACGTGTTTGCAATGGCCTACAATGTAATAGCTATTCCTATCGCTGCTGGAGTCTTCTTTCCTTCTTTGGGGGTTAAATTGCCTCCATGGGCAGCTGGTGCATGCATGGCTTTATCGTCCGTAAGTGTCGTTTGCTCTTCTTTACTTCTTAGGAGATACAAAAGACCAAGACTTACAACAATACTCGAAATAACTGTAGAATAG 3024 43.32 MAPGLRDLQLAQVAAADRRPPDISAADEIPDDLEDVRLLDSYERQDENLAKIGDGMRRVQVTVSGMTCAACSNSVEAALRGVNGVLMASVALLQNRADVVFDPNLIKEEDIKEAIEDAGFEAEIIPETTSVGKKSHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDPTITSKDDIVNAIEDAGFEASFVQSSEQDKILLAVAGIAGEVDVHFLEVILSNLKGVKRFLFDSTSGKLEIIFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYTRLTSKDVEEANNMFRLFISSLSLSVLIFLQRVICPHIPLIYSLLLWRCGPFLMDDWLKWALVTVVQFIIGKRFYIAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEREIDALLIQPGDVLKVLPGTKIPADGVVVWGSSYVNESMVTGESIPVLKEVNSHVIGGTINFHGALHIQATKVGSDAVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTLFGWYVGGILGAYPAEWLPENGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVFTEISRGDFLKLVASAEASSEHPLGKAIVEYARHFHFFDEPSATKNVENQSKESSGWLYDATDFSALPGQGIQCIIEGKRILVGNRKLMNESGISIAPHVDNFVIELEESAKTGILVACDDNLIGVVGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKAEVIQNFQKDGSTVAMVGDGINDSPALAASDIGIAIGAGTDIAIEAADFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPIAAGVFFPSLGVKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILEITVE 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36957752 36968473 - CcPI632755_04g023500.1 Cco04g2350 177575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2350 1007 Gene3D - 56 128 - -
Cco04g2350 1007 FunFam Copper-exporting P-type ATPase A 55 125 - -
Cco04g2350 1007 SUPERFAMILY HMA, heavy metal-associated domain 53 126 IPR036163 GO:0046872(InterPro)
Cco04g2350 1007 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 969 IPR023298 -
Cco04g2350 1007 NCBIfam copper ion binding protein 59 122 IPR006122 GO:0005507(InterPro)
Cco04g2350 1007 NCBIfam copper ion binding protein 142 204 IPR006122 GO:0005507(InterPro)
Cco04g2350 1007 SUPERFAMILY Calcium ATPase, transduction domain A 462 548 IPR008250 -
Cco04g2350 1007 SUPERFAMILY HMA, heavy metal-associated domain 140 210 IPR036163 GO:0046872(InterPro)
Cco04g2350 1007 NCBIfam heavy metal translocating P-type ATPase 376 990 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cco04g2350 1007 Pfam haloacid dehalogenase-like hydrolase 658 894 - -
Cco04g2350 1007 NCBIfam HAD-IC family P-type ATPase 415 691 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g2350 1007 NCBIfam HAD-IC family P-type ATPase 743 962 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g2350 1007 PRINTS P-type cation-transporting ATPase superfamily signature 806 817 - -
Cco04g2350 1007 PRINTS P-type cation-transporting ATPase superfamily signature 904 916 - -
Cco04g2350 1007 PRINTS P-type cation-transporting ATPase superfamily signature 662 676 - -
Cco04g2350 1007 PRINTS P-type cation-transporting ATPase superfamily signature 828 838 - -
Cco04g2350 1007 PRINTS P-type cation-transporting ATPase superfamily signature 498 512 - -
Cco04g2350 1007 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Cco04g2350 1007 ProSiteProfiles Heavy-metal-associated domain profile. 139 205 IPR006121 GO:0046872(InterPro)
Cco04g2350 1007 Gene3D - 629 938 IPR023214 -
Cco04g2350 1007 FunFam Copper-transporting ATPase 1, putative 430 552 - -
Cco04g2350 1007 Pfam E1-E2 ATPase 443 640 - -
Cco04g2350 1007 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 46 1004 - -
Cco04g2350 1007 SUPERFAMILY HMA, heavy metal-associated domain 210 273 IPR036163 GO:0046872(InterPro)
Cco04g2350 1007 Gene3D - 141 206 - -
Cco04g2350 1007 CDD HMA 142 205 IPR006121 GO:0046872(InterPro)
Cco04g2350 1007 ProSitePatterns Heavy-metal-associated domain. 145 174 IPR017969 GO:0046872(InterPro)
Cco04g2350 1007 FunFam Copper-exporting P-type ATPase A 138 207 - -
Cco04g2350 1007 SFLD Haloacid Dehalogenase 644 933 - -
Cco04g2350 1007 SUPERFAMILY HAD-like 661 987 IPR036412 -
Cco04g2350 1007 CDD P-type_ATPase_Cu-like 303 977 - -
Cco04g2350 1007 SFLD p-type atpase 644 933 IPR044492 -
Cco04g2350 1007 FunFam Probable copper-transporting ATPase HMA5 788 938 - -
Cco04g2350 1007 FunFam Copper-exporting P-type ATPase 761 812 - -
Cco04g2350 1007 ProSitePatterns Heavy-metal-associated domain. 63 93 IPR017969 GO:0046872(InterPro)
Cco04g2350 1007 PRINTS H+-transporting ATPase (proton pump) signature 912 937 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g2350 1007 PRINTS H+-transporting ATPase (proton pump) signature 881 897 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g2350 1007 PRINTS H+-transporting ATPase (proton pump) signature 853 869 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g2350 1007 CDD HMA 60 123 IPR006121 GO:0046872(InterPro)
Cco04g2350 1007 ProSitePatterns E1-E2 ATPases phosphorylation site. 664 670 IPR018303 -
Cco04g2350 1007 FunFam Copper-transporting ATPase RAN1 669 760 - -
Cco04g2350 1007 ProSiteProfiles Heavy-metal-associated domain profile. 57 123 IPR006121 GO:0046872(InterPro)
Cco04g2350 1007 Gene3D - 430 552 - -
Cco04g2350 1007 Gene3D - 669 761 IPR023299 GO:0000166(InterPro)
Cco04g2350 1007 Gene3D - 762 812 IPR023299 GO:0000166(InterPro)
Cco04g2350 1007 Pfam Heavy-metal-associated domain 61 121 IPR006121 GO:0046872(InterPro)
Cco04g2350 1007 Pfam Heavy-metal-associated domain 143 203 IPR006121 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0619 Cco-Chr4:20187307 Cco04g2350 Cco-Chr4:36957752 1.60E-240 dispersed
Cco04g0620 Cco-Chr4:20207083 Cco04g2350 Cco-Chr4:36957752 9.00E-10 dispersed
Cco04g2350 Cco-Chr4:36957752 Cco10g0892 Cco-Chr10:18632681 1.00E-93 dispersed
Cco04g2350 Cco-Chr4:36957752 Cco02g1330 Cco-Chr2:25164598 1.20E-187 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2350 K17686 - csv:101205642 1847.4