Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g2395 | ATGGAGAGCCACGGAGCCGGTAGTTATTTCGTGGACGAGAAGGCCGTCCTCGTCGAGAACATTTTCTTCGACTTCCTTAAGAGCTTTCGCCCCAATGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTTATTGATTTCGCTCACCTCATGGGTTCCAATAATCTTCTTCACATTGCAATCGCCGACGAATATCTGAGGTTTGAACCATACCTGAAGAACGCTTGTAAGCGGTTCGTAATGGAGCAGAATCCTTCTTTCATCGCTGACGATAACCCATTCAAGGACATAAATGTTGCTTTCTTCAACATTCCTGTTTCTAGAAGGTTGAGAGAATTGACTACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTTGTGACGCGAACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTTGAACAACAATTTAAGTACACCGAGCCAACAATATGCATGAACCCGACCTGTTCAAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCAGCTGGCTCTCTTCCACGATCTCTGGATGTTATTCTCCGCCATGAAATGGTTGAACGAGCCAGGGCTGGAGACACGGTCATCTTCACAGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAGGAACGCTGCGGTTGGGCATGAAGGAGTGAGGGGGCTGCGAGCCCTAGGAGTGAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGAATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAATTTACTACTGCAGAGCTTGATGACGTTCAAAGAATGAGGAATACACCTGACTTTTTCAATAGACTTGTTGATAGCATTGCACCAGCAGTTTTTGGCCATCAAGATATCAAGCGAGCAATCCTGTTGATGCTGTTAGGTGGTGTCCACAAGTTGACTCATGAAGGCATTAACCTTCGAGGTGACATCAACGTTTGTATAGTAGGAGATCCAAGCTGTGCGAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGAGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCCGACAATGGCATTTGCTGCATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATTACAAAAGCCGGAATACAGGCAACACTAAATGCTAGGACGTCAATCCTCGCTGCTGCTAATCCTACAGGAGGACGCTATGACAAATCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCATATTGCACATCACATTGTGAGAGTACATCAGAAGCATGAAGATGCTCTCTCTCCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTCACTCTTCGCAGAGGAGATACAGCTCCTGGAAGTAGGGTTGCCTATCGCATGACAGTTAGGCAGCTTGAGGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTTCAATCGCGTCATGTGCGTTTAGCAGTGACTTTACTGAAAACGTCAATAATCAGTGTGGAATCTAGTGAGATTGACCTATCTGAATTTGAAGAAGAAACTAACGGAGGTGGAGATGGTGATAATAATGTCGACGATGGGCCTAATGAGGTTGATGCTGAACCTAGGAAAGGTGCAACAGAGCCAACTACTGGAAATAGTGGTTCTGCAAGTAAACATAGGAAGGAGAAACTTCTTGTGAGTGATGAATATTTCCAGAGGGTTACTCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAACGTGCGATGCAAGAAGGACTTGGGCTAGCTGGAATGAGGCAGAGAGACTTAATTGAGTGGTATGTGGATCAACAGAACGAAAGAAATAGCTATAGCTCCATGGAGGAGGCAGATAAAGAAATCAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTAAACGAAGGCCATTTGATAGTGGTAGATGACGGGAGGCCAGTGGATGGCGAGGCATCCGTTCTTAAAACCAAGTCTCTGACTCTCTTGATCTTTGTCAATCGAATGTGCCCACTTCAGCGTACATGTGAAAGTTGGATGTCACGAAGACCTGAATTGATGTCCAAAGTCATTACCGACAGCCGCTTAAGGCTGGGGGTTGTAGAGGCTTTGATTGAGGAAGGGAAACCAACTGAAGCGGACGTCGGGAACAATTCCAATGCAATCTCGAATTCTTTTAAGATCTTGCCAGTATTGATATGTGATTTTTGA | 2688 | 44.42 | MESHGAGSYFVDEKAVLVENIFFDFLKSFRPNGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMGSNNLLHIAIADEYLRFEPYLKNACKRFVMEQNPSFIADDNPFKDINVAFFNIPVSRRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERRNAAVGHEGVRGLRALGVRDLSYRLAFIANSVQVLDGRRNFDIRNRKKDADEDNQQFTTAELDDVQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVTLRRGDTAPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTSIISVESSEIDLSEFEEETNGGGDGDNNVDDGPNEVDAEPRKGATEPTTGNSGSASKHRKEKLLVSDEYFQRVTQALVMRLRQHEERAMQEGLGLAGMRQRDLIEWYVDQQNERNSYSSMEEADKEIKLVRAIIQHLIVNEGHLIVVDDGRPVDGEASVLKTKSLTLLIFVNRMCPLQRTCESWMSRRPELMSKVITDSRLRLGVVEALIEEGKPTEADVGNNSNAISNSFKILPVLICDF | 895 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 37287667 | 37296028 | + | CcPI632755_04g023950.1 | Cco04g2395 | 177620 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g2395 | 895 | Gene3D | - | 149 | 200 | - | - | |
| Cco04g2395 | 895 | Pfam | MCM N-terminal domain | 21 | 115 | IPR027925 | - | |
| Cco04g2395 | 895 | Gene3D | - | 10 | 118 | - | - | |
| Cco04g2395 | 895 | Pfam | MCM AAA-lid domain | 571 | 656 | IPR041562 | - | |
| Cco04g2395 | 895 | FunFam | DNA helicase | 149 | 200 | - | - | |
| Cco04g2395 | 895 | FunFam | DNA helicase | 331 | 661 | - | - | |
| Cco04g2395 | 895 | ProSitePatterns | MCM family signature. | 455 | 463 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cco04g2395 | 895 | Gene3D | - | 327 | 672 | IPR027417 | - | |
| Cco04g2395 | 895 | SMART | mcm | 118 | 657 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | Gene3D | - | 122 | 250 | IPR012340 | - | |
| Cco04g2395 | 895 | Pfam | MCM P-loop domain | 335 | 556 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | Gene3D | - | 712 | 827 | - | - | |
| Cco04g2395 | 895 | Pfam | MCM6 C-terminal winged-helix domain | 716 | 811 | IPR041024 | - | |
| Cco04g2395 | 895 | SUPERFAMILY | Nucleic acid-binding proteins | 22 | 252 | IPR012340 | - | |
| Cco04g2395 | 895 | MobiDBLite | consensus disorder prediction | 667 | 714 | - | - | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 499 | 511 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 475 | 488 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 387 | 402 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 447 | 461 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 526 | 534 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 17 | 767 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| Cco04g2395 | 895 | CDD | MCM6 | 349 | 655 | - | - | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 169 | 186 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 222 | 233 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 281 | 302 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 77 | 89 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 119 | 131 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2395 | 895 | Pfam | MCM OB domain | 122 | 250 | IPR033762 | - | |
| Cco04g2395 | 895 | ProSiteProfiles | MCM family domain profile. | 346 | 552 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 657 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0511 | Cco-Chr2:4762916 | Cco04g2395 | Cco-Chr4:37287667 | 1.80E-99 | dispersed | |
| Cco04g2395 | Cco-Chr4:37287667 | Cco09g0502 | Cco-Chr9:4399185 | 3.90E-92 | dispersed | |
| Cco09g1752 | Cco-Chr9:29692358 | Cco04g2395 | Cco-Chr4:37287667 | 5.60E-06 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g2395 | K02542 | - | csv:101219775 | 1496.49 |