Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g2395 | ATGGAGAGCCACGGAGCCGGTAGTTATTTCGTGGACGAGAAGGCCGTCCTCGTCGAGAACATTTTCTTCGACTTCCTTAAGAGCTTTCGCCCCAATGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTTATTGATTTCGCTCACCTCATGGGTTCCAATAATCTTCTTCACATTGCAATCGCCGACGAATATCTGAGGTTTGAACCATACCTGAAGAACGCTTGTAAGCGGTTCGTAATGGAGCAGAATCCTTCTTTCATCGCTGACGATAACCCATTCAAGGACATAAATGTTGCTTTCTTCAACATTCCTGTTTCTAGAAGGTTGAGAGAATTGACTACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTTGTGACGCGAACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTTGAACAACAATTTAAGTACACCGAGCCAACAATATGCATGAACCCGACCTGTTCAAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCAGCTGGCTCTCTTCCACGATCTCTGGATGTTATTCTCCGCCATGAAATGGTTGAACGAGCCAGGGCTGGAGACACGGTCATCTTCACAGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAGGAACGCTGCGGTTGGGCATGAAGGAGTGAGGGGGCTGCGAGCCCTAGGAGTGAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGAATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAATTTACTACTGCAGAGCTTGATGACGTTCAAAGAATGAGGAATACACCTGACTTTTTCAATAGACTTGTTGATAGCATTGCACCAGCAGTTTTTGGCCATCAAGATATCAAGCGAGCAATCCTGTTGATGCTGTTAGGTGGTGTCCACAAGTTGACTCATGAAGGCATTAACCTTCGAGGTGACATCAACGTTTGTATAGTAGGAGATCCAAGCTGTGCGAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGAGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCCGACAATGGCATTTGCTGCATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATTACAAAAGCCGGAATACAGGCAACACTAAATGCTAGGACGTCAATCCTCGCTGCTGCTAATCCTACAGGAGGACGCTATGACAAATCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCATATTGCACATCACATTGTGAGAGTACATCAGAAGCATGAAGATGCTCTCTCTCCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTCACTCTTCGCAGAGGAGATACAGCTCCTGGAAGTAGGGTTGCCTATCGCATGACAGTTAGGCAGCTTGAGGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTTCAATCGCGTCATGTGCGTTTAGCAGTGACTTTACTGAAAACGTCAATAATCAGTGTGGAATCTAGTGAGATTGACCTATCTGAATTTGAAGAAGAAACTAACGGAGGTGGAGATGGTGATAATAATGTCGACGATGGGCCTAATGAGGTTGATGCTGAACCTAGGAAAGGTGCAACAGAGCCAACTACTGGAAATAGTGGTTCTGCAAGTAAACATAGGAAGGAGAAACTTCTTGTGAGTGATGAATATTTCCAGAGGGTTACTCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAACGTGCGATGCAAGAAGGACTTGGGCTAGCTGGAATGAGGCAGAGAGACTTAATTGAGTGGTATGTGGATCAACAGAACGAAAGAAATAGCTATAGCTCCATGGAGGAGGCAGATAAAGAAATCAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTAAACGAAGGCCATTTGATAGTGGTAGATGACGGGAGGCCAGTGGATGGCGAGGCATCCGTTCTTAAAACCAAGTCTCTGACTCTCTTGATCTTTGTCAATCGAATGTGCCCACTTCAGCGTACATGTGAAAGTTGGATGTCACGAAGACCTGAATTGATGTCCAAAGTCATTACCGACAGCCGCTTAAGGCTGGGGGTTGTAGAGGCTTTGATTGAGGAAGGGAAACCAACTGAAGCGGACGTCGGGAACAATTCCAATGCAATCTCGAATTCTTTTAAGATCTTGCCAGTATTGATATGTGATTTTTGA | 2688 | 44.42 | MESHGAGSYFVDEKAVLVENIFFDFLKSFRPNGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMGSNNLLHIAIADEYLRFEPYLKNACKRFVMEQNPSFIADDNPFKDINVAFFNIPVSRRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERRNAAVGHEGVRGLRALGVRDLSYRLAFIANSVQVLDGRRNFDIRNRKKDADEDNQQFTTAELDDVQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVTLRRGDTAPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTSIISVESSEIDLSEFEEETNGGGDGDNNVDDGPNEVDAEPRKGATEPTTGNSGSASKHRKEKLLVSDEYFQRVTQALVMRLRQHEERAMQEGLGLAGMRQRDLIEWYVDQQNERNSYSSMEEADKEIKLVRAIIQHLIVNEGHLIVVDDGRPVDGEASVLKTKSLTLLIFVNRMCPLQRTCESWMSRRPELMSKVITDSRLRLGVVEALIEEGKPTEADVGNNSNAISNSFKILPVLICDF | 895 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 37287667 | 37296028 | + | CcPI632755_04g023950.1 | Cco04g2395 | 177620 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g2395 | 895 | Gene3D | - | 149 | 200 | - | - | |
| Cco04g2395 | 895 | Pfam | MCM N-terminal domain | 21 | 115 | IPR027925 | - | |
| Cco04g2395 | 895 | Gene3D | - | 10 | 118 | - | - | |
| Cco04g2395 | 895 | Pfam | MCM AAA-lid domain | 571 | 656 | IPR041562 | - | |
| Cco04g2395 | 895 | FunFam | DNA helicase | 149 | 200 | - | - | |
| Cco04g2395 | 895 | FunFam | DNA helicase | 331 | 661 | - | - | |
| Cco04g2395 | 895 | ProSitePatterns | MCM family signature. | 455 | 463 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cco04g2395 | 895 | Gene3D | - | 327 | 672 | IPR027417 | - | |
| Cco04g2395 | 895 | SMART | mcm | 118 | 657 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | Gene3D | - | 122 | 250 | IPR012340 | - | |
| Cco04g2395 | 895 | Pfam | MCM P-loop domain | 335 | 556 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | Gene3D | - | 712 | 827 | - | - | |
| Cco04g2395 | 895 | Pfam | MCM6 C-terminal winged-helix domain | 716 | 811 | IPR041024 | - | |
| Cco04g2395 | 895 | SUPERFAMILY | Nucleic acid-binding proteins | 22 | 252 | IPR012340 | - | |
| Cco04g2395 | 895 | MobiDBLite | consensus disorder prediction | 667 | 714 | - | - | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 499 | 511 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 475 | 488 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 387 | 402 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 447 | 461 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 526 | 534 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 17 | 767 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| Cco04g2395 | 895 | CDD | MCM6 | 349 | 655 | - | - | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 169 | 186 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 222 | 233 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 281 | 302 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 77 | 89 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2395 | 895 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 119 | 131 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cco04g2395 | 895 | Pfam | MCM OB domain | 122 | 250 | IPR033762 | - | |
| Cco04g2395 | 895 | ProSiteProfiles | MCM family domain profile. | 346 | 552 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco04g2395 | 895 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 657 | IPR027417 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g2395 | K02542 | - | - | csv:101219775 | 1496.49 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0511 | Cco-Chr2:4762916 | Cco04g2395 | Cco-Chr4:37287667 | 1.80E-99 | dispersed | |
| Cco04g2395 | Cco-Chr4:37287667 | Cco09g0502 | Cco-Chr9:4399185 | 3.90E-92 | dispersed | |
| Cco09g1752 | Cco-Chr9:29692358 | Cco04g2395 | Cco-Chr4:37287667 | 5.60E-06 | dispersed |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cco08g0051 | . | 106 | 692 | Core DNA Replication Machinery Family | AT4G14700 | 65.4 | 1.5e-220 | 763.1 | |
| Cco08g0051 | . | 20 | 692 | Core DNA Replication Machinery Family | AT4G12620 | 61.6 | 4.0e-229 | 791.6 | |
| Cco08g1757 | . | 65 | 436 | Core DNA Replication Machinery Family | AT2G37560 | 57.3 | 2.2e-123 | 439.1 | |
| Cco07g0493 | . | 9 | 410 | Core DNA Replication Machinery Family | AT2G01120 | 64.8 | 3.5e-152 | 535.0 | |
| Cco06g0369 | . | 3 | 534 | Core DNA Replication Machinery Family | AT4G29910 | 56.9 | 3.3e-169 | 592.0 | |
| Cco11g0902 | . | 1 | 254 | Core DNA Replication Machinery Family | AT1G26840 | 68.5 | 3.6e-92 | 335.1 | |
| Cco09g2466 | . | 68 | 864 | Core DNA Replication Machinery Family | AT1G79150 | 58.7 | 1.4e-248 | 856.3 | |
| Cco10g1289 | . | 8 | 939 | Core DNA Replication Machinery Family | AT1G44900 | 75.5 | 0.0e+00 | 1348.6 | |
| Cco04g2230 | . | 102 | 676 | Core DNA Replication Machinery Family | AT5G46280 | 80.9 | 1.8e-268 | 921.8 | |
| Cco02g0511 | . | 1 | 845 | Core DNA Replication Machinery Family | AT2G16440 | 75.9 | 0.0e+00 | 1146.3 | |
| Cco11g0380 | . | 1 | 735 | Core DNA Replication Machinery Family | AT2G07690 | 78.4 | 0.0e+00 | 1112.1 | |
| Cco04g2395 | . | 7 | 818 | Core DNA Replication Machinery Family | AT5G44635 | 71.9 | 0.0e+00 | 1153.7 | |
| Cco09g0502 | . | 4 | 722 | Core DNA Replication Machinery Family | AT4G02060 | 85.3 | 0.0e+00 | 1219.9 | |
| Cco02g2101 | . | 55 | 521 | Core DNA Replication Machinery Family | AT2G29680 | 62.1 | 3.1e-163 | 572.0 | |
| Cco02g2101 | . | 37 | 482 | Core DNA Replication Machinery Family | AT1G07270 | 59.2 | 7.5e-143 | 504.2 | |
| Cco09g0862 | . | 1 | 593 | Core DNA Replication Machinery Family | AT3G25100 | 76.2 | 1.2e-257 | 885.9 | |
| Cco10g2049 | . | 12 | 783 | Core DNA Replication Machinery Family | AT3G09660 | 72.5 | 0.0e+00 | 1078.2 | |
| Cco09g1753 | . | 44 | 464 | Core DNA Replication Machinery Family | AT2G14050 | 82.4 | 4.2e-197 | 684.9 | |
| Cco09g1752 | . | 9 | 237 | Core DNA Replication Machinery Family | AT2G14050 | 69.0 | 7.9e-87 | 318.5 | |
| Cco02g1292 | . | 1955 | 2365 | Core DNA Replication Machinery Family | AT2G20980 | 56.1 | 7.0e-118 | 421.0 | |
| Cco09g0260 | . | 1 | 192 | Core DNA Replication Machinery Family | AT1G80190 | 67.5 | 2.3e-72 | 268.9 | |
| Cco11g0627 | . | 1 | 184 | Core DNA Replication Machinery Family | AT1G19080 | 69.0 | 3.9e-71 | 264.6 | |
| Cco11g0627 | . | 1 | 184 | Core DNA Replication Machinery Family | AT3G55490 | 69.0 | 3.9e-71 | 264.6 | |
| Cco05g0179 | . | 15 | 164 | Core DNA Replication Machinery Family | AT5G49010 | 65.3 | 8.8e-50 | 193.7 | |
| Cco02g1335 | . | 1 | 1521 | Core DNA Replication Machinery Family | AT5G67100 | 59.0 | 0.0e+00 | 1711.8 | |
| Cco06g0207 | . | 1 | 446 | Core DNA Replication Machinery Family | AT1G67320 | 63.6 | 4.2e-181 | 631.3 | |
| Cco08g0215 | . | 144 | 587 | Core DNA Replication Machinery Family | AT5G41880 | 65.0 | 2.9e-176 | 615.1 | |
| Cco04g1267 | . | 1 | 1086 | Core DNA Replication Machinery Family | AT5G63960 | 80.6 | 0.0e+00 | 1794.6 | |
| Cco10g1734 | . | 1 | 441 | Core DNA Replication Machinery Family | AT2G42120 | 72.1 | 1.6e-192 | 669.1 | |
| Cco06g0207 | . | 1 | 446 | Core DNA Replication Machinery Family | AT1G67320 | 63.6 | 4.2e-181 | 631.3 | |
| Cco01g0571 | . | 1 | 127 | Core DNA Replication Machinery Family | AT1G09815 | 60.0 | 3.2e-37 | 151.4 | |
| Cco02g2358 | . | 1 | 1866 | Core DNA Replication Machinery Family | AT1G08260 | 74.8 | 0.0e+00 | 2799.6 | |
| Cco09g2253 | . | 1 | 1999 | Core DNA Replication Machinery Family | AT1G08260 | 69.1 | 0.0e+00 | 2770.3 | |
| Cco09g2253 | . | 1 | 2090 | Core DNA Replication Machinery Family | AT2G27120 | 66.0 | 0.0e+00 | 2739.1 | |
| Cco02g2358 | . | 25 | 1861 | Core DNA Replication Machinery Family | AT2G27120 | 71.9 | 0.0e+00 | 2632.4 | |
| Cco01g1863 | . | 7 | 496 | Core DNA Replication Machinery Family | AT5G22110 | 63.0 | 4.9e-169 | 591.3 | |
| Cco02g2410 | . | 108 | 1032 | Core DNA Replication Machinery Family | AT5G22010 | 63.3 | 2.4e-307 | 1051.6 | |
| Cco10g0353 | . | 3 | 332 | Core DNA Replication Machinery Family | AT1G63160 | 91.5 | 2.2e-173 | 605.1 | |
| Cco04g0633 | . | 1 | 354 | Core DNA Replication Machinery Family | AT5G27740 | 85.3 | 1.1e-178 | 622.9 | |
| Cco11g1646 | . | 1 | 334 | Core DNA Replication Machinery Family | AT1G21690 | 82.1 | 3.3e-153 | 538.1 | |
| Cco08g0722 | . | 1 | 363 | Core DNA Replication Machinery Family | AT1G77470 | 76.3 | 4.6e-156 | 547.7 | |
| Cco11g0176 | . | 26 | 607 | Core DNA Replication Machinery Family | AT2G06510 | 68.0 | 4.0e-245 | 844.3 | |
| Cco10g0112 | . | 32 | 703 | Core DNA Replication Machinery Family | AT2G06510 | 50.1 | 2.4e-194 | 675.6 | |
| Cco06g1757 | . | 1 | 623 | Core DNA Replication Machinery Family | AT5G08020 | 68.3 | 2.9e-248 | 854.7 | |
| Cco10g0112 | . | 10 | 812 | Core DNA Replication Machinery Family | AT5G45400 | 50.5 | 2.8e-225 | 778.9 | |
| Cco06g1757 | . | 1 | 618 | Core DNA Replication Machinery Family | AT5G61000 | 65.9 | 3.0e-240 | 828.2 | |
| Cco10g0112 | . | 5 | 798 | Core DNA Replication Machinery Family | AT4G19130 | 53.5 | 1.1e-223 | 773.5 | |
| Cco03g1856 | . | 1 | 404 | Core DNA Replication Machinery Family | AT5G26680 | 82.7 | 2.7e-189 | 658.3 | |
| Cco05g0323 | . | 1 | 1110 | Core DNA Replication Machinery Family | AT1G08840 | 52.4 | 6.2e-299 | 1023.8 | |
| Cco07g1648 | . | 1 | 297 | Core DNA Replication Machinery Family | AT2G25100 | 67.0 | 2.3e-115 | 412.1 | |
| Cco02g2308 | . | 2 | 762 | Core DNA Replication Machinery Family | AT1G08130 | 68.8 | 4.8e-296 | 1013.8 | |
| Cco02g2308 | . | 162 | 762 | Core DNA Replication Machinery Family | AT1G49250 | 68.6 | 1.1e-240 | 829.7 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007427 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 6 | 1 | 2 | 1 | 1 | 0 | 1 | 0 | 33 |