Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g2396 ATGGTTGCAGCAGCTTCAGCTTGGCACATGAAGTTCTTCACACTTACACTTGTGGTGCTCCTCCTTCCTTGTGTATGTGTATGTGTGCACTCCCACTCACTGTCCCTCAAGGCACAAGCTTCTGTTCTGCTTTCCATCAAACACAGTTTCGATGAAGCCACTCCAATTTCGACTCTCCTGGACTGGAATGCTTCAAATTACTCAGACCTCTGCAGTTGGACTGGAATTCAATGCGATGCCATTGGCATGAAGAGATCAGTAGTGTCGCTCGACATTTCCAATTCCAACATCTCCGGGACCTTCCCCCCTCTAATTCACAAGCTAACCAAGCTTCGCTTTCTCAACATTTCCAACAATCAGTTCAGGGGGCAACTCCAGTGGGAGTATTCTCAGTTGAAACTGCTGCAGGTATTTGATGCTTATAACAACAATTTCAATGGCTCCCTCCCCACAGGCGTCCTTCAACTTCCCAGTCTAAAGCACTTAAATCTTGGCGGGAATTACTTCACCGGTCGAATCCCTCCAAGCTATGGTGATATGGGGGAGCTCACTTATCTGTCCCTTGCCGGCAATGACTTGGGCGGTCCCATTCCCCCTGACCTCGGTAATCTTACCAATCTCCACCGCCTTTATTTGGGATACTTCAACCAGTTTGAGGGTGGGATACCGTCTCAACTCGAACAACTAGTGAATTTGAATCATCTCGACCTTGCGAGTTGTGGTTTACAAGGTCCAATCCCACCCGGGTTGGGGAATCTCAACAAGTTGGACACTCTGTTCTTGCAGACAAATCAGCTGAGCGGTTCAATTCCAACCCAGTTGGGCAACTTGAGCGCCTTGATTTCCCTTGACCTCTCCAACAACCAGTTAACGGGAGAGATCCCCCTTGAATTTGCAAACCTCCGCCAGCTTTCGCTGCTCAATTTATTCATGAACAAGTTGCATGGGGAGATTCCTAATGTTGTAGCCCATCTTCCGGGGTTGGAGGTTTTGAAGCTGTGGCAAAACAACTTCACAGGAGGCATTCCGTCAAAGCTGGGTGAGAATGGGAAGCTGAGGGAGGTGGACTTGTCCAGCAACAAGCTCACTGGGATGGTCCCGGAGCGTTTGTGCTTAGGAGGAAGGCTGAAGATCTTGATTTTACTCAACAATTTTTTGTTTGGGGGTGTGCCAGGTGATCTAGGGCGATGCCAGACGCTTGTAAGAGTTCGGATGGGTCAGAATTATTTGACGGGAACAATCCCAGATGGGCTGCTTTACTTGCCACAACTCTCCCTCATGGAATTGCAGAACAACTACCTGAGCGGACCCCTTCCACAACCACAACACATCCGCCAACTCCCCTCCAAACTAGGCCACCTAAACCTTTCCAACAATCGCTTTTCTGGATCCCTCCCCATCTCCATCAGCAACTTCACAAACCTCCAGATTCTGCTTTTGAGTGGAAACCGTTTCTCTGGCCACATTCCTCCCCAAATTGGCAAACTGCGAAATCTTCTCAAGCTAGACATGAGCAGAAACAACTTTTCCGGTTCAATCCCTCCTGAGTTCAGCAATTGTGTCTCCCTCACTTACCTGGATTTGAGCCTCAATCACCTAACTTCTTCAATCCCAGTTCAAATCTCACAAATTCGCATCTTAAATTATCTTAACTTGTCTTGGAACCATCTCACCCACACCCTTCCCATCGAAATTGGCTCCATAAAAAGCTTGACCTCTGCCGACTTCTCCCACAACAACTTTTCCGGTCCCATACCCCAAACTGGCCAGTTTCTACTCTTCAATTCCACATCCTTTGTGGGCAATCCTCAATTGTGTGGATTCTCCTTGAATCCCTGCAAGTCTCAAACCCCAACCACCGCCAATTCGAACAAAGGTGTTGGGAAATATAAGTTGGTGTTCGCGTTGGGGCTATTGATGTGTTCAGTAATATTTGCAGCTCTGGCAATTGTTCAGACAAGGAAAGCGAAAAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGTAAGGATATCACAGAGTGCATAAAAGAGAACAACATAATTGGAAAAGGAGGAGCTGGTATTGTGTACAAAGGAATCATGCCAAACGGGGAACAAGTAGCCATAAAAAAGCTGTTGGCCATAACCAAGGGCTCCTCCCACGACAACGGCCTGTCCGCCGAGATACGAACGCTGGGCAAAATCCGGCATAGGAACATCGTGAGATTGCTTGCGTTTTGCTCCAATAAGCAGACGAATCTGCTGGTATACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTCCACGGGAAGAGGGGGGGTTCTCTAAAATGGGGAACCAGGCTGAAGATAGCCATAGAAGCCGCCAAAGGGCTTTGCTATTTGCACCATGACTGCTCCCCGCTCATAATTCATAGGGACGTCAAGTCCAACAACATTTTGCTCAACTCAGACTTCGAGGCTCATGTAGCGGACTTCGGTTTGGCCAAGTTCTTGCAAGACAATGGAACATCGGAGTGCATGTCTGCAATAGCCGGCTCTTATGGGTACATTGCTCCAGAATATGCATACACATTAAAAGTGGACGAAAAAACTGATGTTTACAGTTTTGGAGTGGTACTGCTGGAGTTGATAACGGGGCGGAAGCCAGTTGGAAATTTTGGAGAAGATGGTTTGGACCTTGTCCAGTGGGCTAGGATTCAAACCAACTCCACCAAAGAAGGTGTTGTTAAGAACACAGCGTGGAGCGGCCAACAATGA 2763 47.74 MVAAASAWHMKFFTLTLVVLLLPCVCVCVHSHSLSLKAQASVLLSIKHSFDEATPISTLLDWNASNYSDLCSWTGIQCDAIGMKRSVVSLDISNSNISGTFPPLIHKLTKLRFLNISNNQFRGQLQWEYSQLKLLQVFDAYNNNFNGSLPTGVLQLPSLKHLNLGGNYFTGRIPPSYGDMGELTYLSLAGNDLGGPIPPDLGNLTNLHRLYLGYFNQFEGGIPSQLEQLVNLNHLDLASCGLQGPIPPGLGNLNKLDTLFLQTNQLSGSIPTQLGNLSALISLDLSNNQLTGEIPLEFANLRQLSLLNLFMNKLHGEIPNVVAHLPGLEVLKLWQNNFTGGIPSKLGENGKLREVDLSSNKLTGMVPERLCLGGRLKILILLNNFLFGGVPGDLGRCQTLVRVRMGQNYLTGTIPDGLLYLPQLSLMELQNNYLSGPLPQPQHIRQLPSKLGHLNLSNNRFSGSLPISISNFTNLQILLLSGNRFSGHIPPQIGKLRNLLKLDMSRNNFSGSIPPEFSNCVSLTYLDLSLNHLTSSIPVQISQIRILNYLNLSWNHLTHTLPIEIGSIKSLTSADFSHNNFSGPIPQTGQFLLFNSTSFVGNPQLCGFSLNPCKSQTPTTANSNKGVGKYKLVFALGLLMCSVIFAALAIVQTRKAKKKSSSWKLAAFQKLEFGSKDITECIKENNIIGKGGAGIVYKGIMPNGEQVAIKKLLAITKGSSHDNGLSAEIRTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHGKRGGSLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFLQDNGTSECMSAIAGSYGYIAPEYAYTLKVDEKTDVYSFGVVLLELITGRKPVGNFGEDGLDLVQWARIQTNSTKEGVVKNTAWSGQQ 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37296958 37300701 - CcPI632755_04g023960.1 Cco04g2396 177621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g2396 920 SMART serkin_6 682 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2396 920 Gene3D Ribonuclease Inhibitor 210 371 IPR032675 -
Cco04g2396 920 SUPERFAMILY L domain-like 70 385 - -
Cco04g2396 920 SUPERFAMILY Protein kinase-like (PK-like) 676 890 IPR011009 -
Cco04g2396 920 SMART LRR_typ_2 229 253 IPR003591 -
Cco04g2396 920 SMART LRR_typ_2 472 495 IPR003591 -
Cco04g2396 920 SMART LRR_typ_2 496 519 IPR003591 -
Cco04g2396 920 SMART LRR_typ_2 325 349 IPR003591 -
Cco04g2396 920 SMART LRR_typ_2 520 544 IPR003591 -
Cco04g2396 920 SMART LRR_typ_2 350 373 IPR003591 -
Cco04g2396 920 SMART LRR_typ_2 277 300 IPR003591 -
Cco04g2396 920 SMART LRR_typ_2 156 179 IPR003591 -
Cco04g2396 920 SMART LRR_typ_2 180 204 IPR003591 -
Cco04g2396 920 Gene3D Ribonuclease Inhibitor 491 615 IPR032675 -
Cco04g2396 920 Gene3D Ribonuclease Inhibitor 36 200 IPR032675 -
Cco04g2396 920 Pfam Leucine Rich Repeat 158 178 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Pfam Leucine Rich Repeat 498 520 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Pfam Leucine Rich Repeat 280 301 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Pfam Leucine Rich Repeat 474 496 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Pfam Leucine Rich Repeat 547 567 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Pfam Leucine Rich Repeat 87 108 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Pfam Leucine Rich Repeat 522 542 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Pfam Leucine Rich Repeat 351 371 IPR001611 GO:0005515(InterPro)
Cco04g2396 920 Gene3D Ribonuclease Inhibitor 443 490 IPR032675 -
Cco04g2396 920 Gene3D Ribonuclease Inhibitor 372 442 IPR032675 -
Cco04g2396 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g2396 920 Pfam Leucine rich repeat N-terminal domain 38 79 IPR013210 -
Cco04g2396 920 Gene3D Phosphorylase Kinase; domain 1 646 759 - -
Cco04g2396 920 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 217 322 - -
Cco04g2396 920 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 903 IPR050647 -
Cco04g2396 920 SUPERFAMILY L domain-like 294 626 - -
Cco04g2396 920 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 329 617 - -
Cco04g2396 920 Gene3D Transferase(Phosphotransferase) domain 1 760 916 - -
Cco04g2396 920 Pfam Protein kinase domain 684 887 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g2396 920 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 760 915 - -
Cco04g2396 920 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 651 759 - -
Cco04g2396 920 FunFam Leucine-rich repeat receptor-like protein kinase 36 199 - -
Cco04g2396 920 ProSiteProfiles Protein kinase domain profile. 682 920 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2396 Cco-Chr4:37296958 Cco10g0762 Cco-Chr10:12065143 5.20E-132 dispersed
Cco04g2396 Cco-Chr4:37296958 Cco04g1559 Cco-Chr4:30948394 3.40E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86803 PF00069 Pkinase 2.80E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g2396 - - - 0.0