Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g0011 | ATGGAAACTGGATCCCAAAGATCATCAGGGCGAGGGCAGGTTGTTCCCAATATCAATTATCAAGTTCAAGTGTCGTTCCATCTCTCAAATGCACCGCATGATCCCCAGCCCATCCAGGAAATGGGATTCGTGCAATTGGAAGAGCAGAGCCAGGTTTTGAGCTTCTTGGCACCAAATAACGCCGCCATGCCACCTGCCTTTACTAACCCTACTACTTCTGCTCACACCTCACACCTCCTGCCTCGACCTTCTTGGAGTTCACAACAGCAGGTGGGCGGAACAGTGGATCCGAAGGCCGGGAACGAGGAAAACTGCACGGGTAGTGCTAGTGACGGCAGCAATTCATGGTGGAGAAACACAAACCCAGATAAGAGTAAGGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTCCTCGACGATGGCTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCATCCTAGAAGCTATTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGGGTGGAGCGACTGTCAGAGGATTGCCGGATGGTGATAACCACCTACGAAGGGTTAGGCGACGCCAAATCCAGTTGCACCTATAAAATCCCTTTTACGCATCAACCCGCTTCAACTGCGGTCTCGGCGTCTCCCACTACACAGTTTGAAGAGAAGCATAGCTCAGCAGAACACGCCGGTCCACAAAAAATGGAGCAGAGCTTTATCATGATCAAGCCTGATGGAGTTCAGAGAGGCCTGGTTGGAGAGATCATCAGTAGGTTTGAGAAGAAGGGCTTTTCTCTAAGAGGTTTGAAACTCATGTCTGTGGATCGTGCTTTTGCTGAGAATCATTACTCTGATCTTGCTGGAAAGCCCTTTTTCAATGGATTGATTGAATACATAATTTCTGGCCCCGTCGTTGCAATGATCTGGGAGGGGAAAAATGTTGTAGCAACTGGTAGGAAGATCATCGGAGCCACGAAGCCGGTAGATTCTGATGTGGGAACCATCCGTGGTGACTATGCAATTGATGTTGGCAGGAACATCATTCATGGAAGTGACTCGGTGGAGAGTGCAAGGAAGGAAATTGCTCTGTGGTTCCCTGAAGGTCAAGTTTACTGGCACAGCAACCTTCATCCCTGGATCTACGATGGCATGGTTGGTTGCATGCTGTTTTTGACACCTGAAATCTTGAAACCAAATGGTGCCTCACTACCAATGGCCGGTACGACACTCAGCAGAGAAACGGTAGTTTATGAAAATGTGAGAGAGGAGACGGAATGGGATGATGGTTCTCTTGTCGCTCCGCGGGCAGCGGCCTAG | 1356 | 49.19 | METGSQRSSGRGQVVPNINYQVQVSFHLSNAPHDPQPIQEMGFVQLEEQSQVLSFLAPNNAAMPPAFTNPTTSAHTSHLLPRPSWSSQQQVGGTVDPKAGNEENCTGSASDGSNSWWRNTNPDKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGLGDAKSSCTYKIPFTHQPASTAVSASPTTQFEEKHSSAEHAGPQKMEQSFIMIKPDGVQRGLVGEIISRFEKKGFSLRGLKLMSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPVDSDVGTIRGDYAIDVGRNIIHGSDSVESARKEIALWFPEGQVYWHSNLHPWIYDGMVGCMLFLTPEILKPNGASLPMAGTTLSRETVVYENVREETEWDDGSLVAPRAAA | 451 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 119245 | 126169 | + | CcPI632755_05g000110.1 | Cco05g0011 | 177639 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g0011 | 451 | FunFam | Nucleoside diphosphate kinase | 245 | 395 | - | - | |
| Cco05g0011 | 451 | CDD | NDPk_I | 249 | 378 | - | - | |
| Cco05g0011 | 451 | Gene3D | WRKY domain | 136 | 202 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco05g0011 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 315 | 332 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cco05g0011 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 251 | 273 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cco05g0011 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 295 | 314 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cco05g0011 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 336 | 352 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cco05g0011 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 359 | 378 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cco05g0011 | 451 | SMART | ndk_5 | 248 | 385 | IPR034907 | - | |
| Cco05g0011 | 451 | MobiDBLite | consensus disorder prediction | 68 | 122 | - | - | |
| Cco05g0011 | 451 | SUPERFAMILY | WRKY DNA-binding domain | 141 | 202 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco05g0011 | 451 | SUPERFAMILY | Nucleoside diphosphate kinase, NDK | 248 | 393 | IPR036850 | - | |
| Cco05g0011 | 451 | Pfam | WRKY DNA -binding domain | 150 | 202 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco05g0011 | 451 | SMART | WRKY_cls | 149 | 208 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco05g0011 | 451 | FunFam | WRKY transcription factor 57 | 135 | 208 | - | - | |
| Cco05g0011 | 451 | Pfam | Nucleoside diphosphate kinase | 249 | 382 | IPR034907 | - | |
| Cco05g0011 | 451 | Gene3D | - | 247 | 396 | IPR036850 | - | |
| Cco05g0011 | 451 | ProSitePatterns | Nucleoside diphosphate kinases active site. | 359 | 367 | IPR023005 | - | |
| Cco05g0011 | 451 | PANTHER | NUCLEOSIDE DIPHOSPHATE KINASE | 238 | 394 | - | GO:0004550(PANTHER) | |
| Cco05g0011 | 451 | Hamap | Nucleoside diphosphate kinase [ndk]. | 248 | 383 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cco05g0011 | 451 | ProSiteProfiles | WRKY domain profile. | 144 | 202 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0355 | Cco-Chr3:3859216 | Cco05g0011 | Cco-Chr5:119245 | 2.90E-52 | dispersed | |
| Cco04g1348 | Cco-Chr4:28833947 | Cco05g0011 | Cco-Chr5:119245 | 3.60E-32 | dispersed | |
| Cco05g0011 | Cco-Chr5:119245 | Cco07g1240 | Cco-Chr7:26263667 | 5.20E-45 | dispersed | |
| Cco05g0011 | Cco-Chr5:119245 | Cco02g0098 | Cco-Chr2:1096902 | 2.30E-32 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 59180 | PF00334 | NDK | 2.30E-52 | No_clan | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g0011 | K00940 | - | csv:101216931 | 305.834 |