Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0014 ATGCTTCCAGAATCAAATGTACTTCCGGGAAAATTTTGTGTTTTGGATGATATACCAAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCACTGGTCGAACATGCACTCAGCTAAGGTACGAGACGTGGGAAGATCAATTGGACAAGGATTTCAAGATTCAGAAGTTTCTGCACCTATACGGACGTCAAAGGGGAAATCCTCTTTTTTGGGGCAGGAAGAAGCTAAGCGTGATGTCACTTTAAAGGGCAGTAGCTCTTTGATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCGCCGGAGCCTGTGGATATGGATCTAATGAGAACTGTTTATGTACCCATAGGGCAAAATAAACCTGATCCCGGCTGCTTGATGAAGAGCTTTTCCGTTAAGGGCCCTTTTCTTGAGGATCTTTCAATCAGGGTTCCAGCCAAGAAACCAAGCCCTGCTGTTCTCTCCCCTACAGAAAGCTTAGTTGACGAGCCGCATGACTTGGGTGTTTTATCTTCCCCTTTTTCAATTCCTCGTGCATCACAAAATACAGAAACCTCTCTACTTCCCCCAGATTCTGAGGAGAAGGAATGTGTTTGGGATGCTTCTTTGCCCCCAAGTGGCAATGTAAGTCCACTCAGTAGCATTGACAGTAGTGGAGTTGTCACAGCTATGAGCATTGTTAATAGTTGTGCTAGCACATATCGAAGTGATGGAATGGTTAGTATTGAAAGGAACTGTGAGAGTACAAAAGGAAGCATTAGAGGGGACTCTCTCGAGAGTGCAAAAACAAGTATTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGATGATAGTAGTTGGAGTAACATCACAGGAAGTGCTAATAAGCCTCACAAAGGAAACGATCCTAGGTGGAAAGCCATTCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGCCATTTTAGACTGCTGAAAAGACTTGGATGTGGCGATATTGGTAGTGTTTATCTCTCAGAGCTAAGTGGGACGCGCTGTTATTTTGCAATGAAAGTAATGGACAAGGCATCGCTTGCTATAAGGAAGAAGTTAACGAGAGCTCAGACAGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACTTTGTACACCCATTTTGAGACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAACCAGGGAAACACTTCTCTGAGTATGCTGCAAGGTTCTATGCTGCAGAGGTTTTACTGGCCCTCGAATATCTCCACATGCTTGGAGTTGTCTATAGGGACTTGAAACCGGAGAATGTACTGGTTCGTGATGACGGCCACATAATGCTCTCAGATTTCGACCTTTCACTAAGATGTGCAGTGTCACCCACCCTGATAAAAACCTCATACGATTCTGACCCATCAAAACGAGCTGCATTCTGTGTCCAGCCTGCCTGTATTGAGCCATCATCAGTTTGCATCCAACCAGCATGTTTTATTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAAGTGATCTGGGCTTGCAATCCAGTGCTCTTCCCGAGCTGGTAGCAGAGCCTACTGCTGCCCGATCCATGTCTTTTGTTGGCACCCATGAATACCTAGCCCCTGAAATCATCAAAGGAGAGGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTGTATGGAAAAACCCCGTTCAAGGGATCTGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAACTGAAGTTCCCAGAGTCTCCGGCAACTAGTTATGCTAGCCGAGATCTTATTCGAGGTTTGCTAGTAAAGGAGCCACAGCATCGGCTCGGAGTGAAGAGGGGAGCAACGGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACGCCCCCAGAAGTGCCAAGACCAATGGAGGCGGAACTGCCTAAGTTTGGGGTAGTTGACACAACAGGGGTTGGGAGCAGCAGTAAGAGGATGGTAGGTACAGATGTTGTTAAGTCTGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA 2133 46.37 MLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIGQGFQDSEVSAPIRTSKGKSSFLGQEEAKRDVTLKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPGCLMKSFSVKGPFLEDLSIRVPAKKPSPAVLSPTESLVDEPHDLGVLSSPFSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPLSSIDSSGVVTAMSIVNSCASTYRSDGMVSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRAAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRSDLGLQSSALPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDTTGVGSSSKRMVGTDVVKSGGQYLDFEFF 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 133185 137665 - CcPI632755_05g000140.1 Cco05g0014 177642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0014 710 Gene3D Phosphorylase Kinase; domain 1 316 401 - -
Cco05g0014 710 MobiDBLite consensus disorder prediction 176 190 - -
Cco05g0014 710 CDD STKc_phototropin_like 316 669 - -
Cco05g0014 710 PANTHER FLIPPASE KINASE 1-RELATED 194 671 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco05g0014 710 FunFam Serine/threonine-protein kinase D6PK-like 316 401 - -
Cco05g0014 710 FunFam serine/threonine-protein kinase D6PK-like 402 469 - -
Cco05g0014 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0014 710 SMART serkin_6 318 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0014 710 MobiDBLite consensus disorder prediction 252 295 - -
Cco05g0014 710 Gene3D Transferase(Phosphotransferase) domain 1 402 473 - -
Cco05g0014 710 MobiDBLite consensus disorder prediction 51 69 - -
Cco05g0014 710 Gene3D Transferase(Phosphotransferase) domain 1 545 667 - -
Cco05g0014 710 FunFam serine/threonine-protein kinase D6PK-like 545 668 - -
Cco05g0014 710 MobiDBLite consensus disorder prediction 252 291 - -
Cco05g0014 710 ProSiteProfiles Protein kinase domain profile. 318 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0014 710 SUPERFAMILY Protein kinase-like (PK-like) 300 674 IPR011009 -
Cco05g0014 710 Pfam Protein kinase domain 319 469 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0014 710 Pfam Protein kinase domain 547 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0014 710 MobiDBLite consensus disorder prediction 51 103 - -
Cco05g0014 710 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2354 Cco-Chr2:35959367 Cco05g0014 Cco-Chr5:133185 7.80E-149 dispersed
Cco05g0014 Cco-Chr5:133185 Cco10g1370 Cco-Chr10:26715631 9.40E-182 dispersed
Cco05g0014 Cco-Chr5:133185 Cco01g1229 Cco-Chr1:18768052 9.40E-190 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86804 PF00069 Pkinase 5.10E-36 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0014 - - - 0.0