Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0035 ATGACACATTTCCTTTTCTTTGCCGCCCTTCTCTCTCTTTCACTTACCCCTTCCTTTTGCTTCCATCCCAAATCCTTCAATCTGTCTAACTACCACTCCTATGACTCTGATTGGTCTCCGGCCGTCGCCACCTGGTACGGTCCTCCTAATGGTGCCGGGAGCGATGGAGGTTCGTGTGGATATGGAAAGGCGGTGGAGCAACCACCATTTTCGTCGTTAGTTACGGCGGGAGGCCCTTCTTTGTACAAATCTGGCAAAGCCTGTGGAGCTTGTTATCAGGTGAAGTGCTCCGGAGAAGTCGCGTGCTCAGGGAATCCAGTGACGGTGGTTATAACCGATAGTTGTCCCGGTGGCTCCTGTGCTTCTGACTTCGTCCACTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCAACTGGCCAGGCTGATGAACTCCGCAGTCTCGGCGTTTTGCACATTCAACATAAAAGGGTGGAATGCAATTATCCGAGAATGTCAATCAGTTTCGTCGTGGACTCGGGGTCGAACTCGAACTATTTCGCAGCTCTGATCGAATATGAAGATGGAGATGGGGAACTTGGTTCAGTGGAGCTGAAACAGGCGGACTCGTACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTTGACTCCGGCTCAGCCCTTCAAGCTCCCTTCTCCCTCAGGCTCACCGCCCTGGACTCCGGCAAAATCGTGGTCGCAAACAACGTAATTCCCGTCGGGTGGCAGCCAGGGATGACTTATAGATCAGCGGTCAACTTCGATACTTAA 804 52.36 MTHFLFFAALLSLSLTPSFCFHPKSFNLSNYHSYDSDWSPAVATWYGPPNGAGSDGGSCGYGKAVEQPPFSSLVTAGGPSLYKSGKACGACYQVKCSGEVACSGNPVTVVITDSCPGGSCASDFVHFDLSGTAFGAMAATGQADELRSLGVLHIQHKRVECNYPRMSISFVVDSGSNSNYFAALIEYEDGDGELGSVELKQADSYSWIPMKQSWGAVWKLDSGSALQAPFSLRLTALDSGKIVVANNVIPVGWQPGMTYRSAVNFDT 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 381582 382587 - CcPI632755_05g000350.1 Cco05g0035 177663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0035 267 Gene3D - 24 162 IPR036908 -
Cco05g0035 267 PRINTS Major pollen allergen Lol pI signature 76 87 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco05g0035 267 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco05g0035 267 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco05g0035 267 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco05g0035 267 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco05g0035 267 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco05g0035 267 SMART dpbb_1 74 156 IPR007112 -
Cco05g0035 267 Pfam Expansin C-terminal domain 168 250 IPR007117 -
Cco05g0035 267 PANTHER EXPANSIN-B3 11 265 - -
Cco05g0035 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 261 IPR007117 -
Cco05g0035 267 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576(InterPro)
Cco05g0035 267 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
Cco05g0035 267 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576(InterPro)
Cco05g0035 267 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Cco05g0035 267 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Cco05g0035 267 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Cco05g0035 267 SUPERFAMILY Barwin-like endoglucanases 37 186 IPR036908 -
Cco05g0035 267 Gene3D - 165 266 IPR036749 -
Cco05g0035 267 CDD DPBB_EXPB_N 38 161 - -
Cco05g0035 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 166 IPR007112 -
Cco05g0035 267 SUPERFAMILY PHL pollen allergen 168 261 IPR036749 -
Cco05g0035 267 Pfam Lytic transglycolase 75 140 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1877 Cco-Chr2:31664560 Cco05g0035 Cco-Chr5:381582 2.20E-62 dispersed
Cco05g0035 Cco-Chr5:381582 Cco07g0300 Cco-Chr7:3021118 3.00E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0035 - - - 0.0