Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0045 ATGGAACCATTTTTCAATTATATTGAAGCATCTGATGCTAAAGCAACCACCTTTTGCAACTCTGCCTCTATCAGAACCCATGAATACCAACAAGTTTCTAAGAACCGTAAACAGAGGAGCACTCAAGAAAGCAGAGATCATCACCCTATGTTCAGAGGAGTTCGAAAACGAAATTGGGGAAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACCAGAATTTGGCTTGGAACTTACCCAACGCCGGAAATGGCAGCCCGAGCCCATGACGCCGCCGCGCTGGCTATTAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAATTCCTACCTCGCCCGCTCTCCAGGTCCCACAAGGACATTCAGGCCGCCGCCGCACAGGCGGCAGCCACCACATTTTCCGCTGGAAGTGACGCTGAAGGTGGAGGAGGAGAAGCGGCGGAGGAGAGCAGGGAGACTCTGTTTCCTGGAAGCGACGGGGGAGACAGAACAGAGGACTCTACAAACTCCCTGTCAACGGCAGCCGGTGATGAGACATTGTTCGATTTGCCAGATTTGTTGGTCGGAAGTTCTGATTTGAAAGACGGATTTGTTTATCATTCTTCATTGTGGCAGTTCTGTGCTGCGGCCGATCATAATGGTTTTCGGCTAGAAGAGCCTTCATTCTGGGAACTAATTTAA 690 50.0 MEPFFNYIEASDAKATTFCNSASIRTHEYQQVSKNRKQRSTQESRDHHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSRSHKDIQAAAAQAAATTFSAGSDAEGGGGEAAEESRETLFPGSDGGDRTEDSTNSLSTAAGDETLFDLPDLLVGSSDLKDGFVYHSSLWQFCAAADHNGFRLEEPSFWELI 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 482145 482834 - CcPI632755_05g000450.1 Cco05g0045 177673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0045 229 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0045 229 MobiDBLite consensus disorder prediction 28 51 - -
Cco05g0045 229 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Cco05g0045 229 CDD AP2 51 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0045 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 203 IPR051032 -
Cco05g0045 229 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0045 229 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677(InterPro)
Cco05g0045 229 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0045 229 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0045 229 MobiDBLite consensus disorder prediction 135 176 - -
Cco05g0045 229 SMART rav1_2 50 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0045 229 MobiDBLite consensus disorder prediction 30 50 - -
Cco05g0045 229 Pfam AP2 domain 51 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0045 Cco-Chr5:482145 Cco06g0249 Cco-Chr6:2676148 2.80E-34 dispersed
Cco05g0045 Cco-Chr5:482145 Cco11g1567 Cco-Chr11:28561775 2.30E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59187 PF00847 AP2 4.30E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0045 - - - 0.0