Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0052 ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTTCAGCCGACTCACATGCACAGGTCGTTGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAACTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCCGGAGACGAGGCTGAGGCTGAGGCTGGGGCAGAGGCGGAAGCCGAGAGAGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCAAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCACTCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCGTCTTCTTCGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTACTGTGCAGCGCCCCTCGATGGCCATTAACCCGTGGGCAGTGTTACCAATTCAACGTTGA 882 52.38 MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRSLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLTPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSASAATTTRHPAAATVQRPSMAINPWAVLPIQR 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 523969 525991 + CcPI632755_05g000520.1 Cco05g0052 177680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0052 293 FunFam Homeobox-leucine zipper protein 18 125 201 - -
Cco05g0052 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 272 IPR050762 -
Cco05g0052 293 ProSitePatterns 'Homeobox' domain signature. 171 194 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco05g0052 293 MobiDBLite consensus disorder prediction 98 141 - -
Cco05g0052 293 Pfam Homeodomain 140 194 IPR001356 GO:0003677(InterPro)
Cco05g0052 293 Gene3D - 133 201 - -
Cco05g0052 293 Pfam HD-ZIP protein N terminus 1 101 IPR006712 GO:0005634(InterPro)
Cco05g0052 293 SMART HOX_1 138 200 IPR001356 GO:0003677(InterPro)
Cco05g0052 293 Coils Coil 202 232 - -
Cco05g0052 293 Pfam Homeobox associated leucine zipper 196 230 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0052 293 MobiDBLite consensus disorder prediction 80 96 - -
Cco05g0052 293 SMART halz 196 239 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0052 293 SUPERFAMILY Homeodomain-like 126 197 IPR009057 -
Cco05g0052 293 ProSiteProfiles 'Homeobox' domain profile. 136 196 IPR001356 GO:0003677(InterPro)
Cco05g0052 293 CDD homeodomain 140 197 IPR001356 GO:0003677(InterPro)
Cco05g0052 293 MobiDBLite consensus disorder prediction 71 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0052 Cco-Chr5:523969 Cco10g0249 Cco-Chr10:2652289 1.50E-72 dispersed
Cco05g0052 Cco-Chr5:523969 Cco09g0363 Cco-Chr9:3298066 4.30E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59188 PF04618 HD-ZIP_N 3.70E-31 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0052 K09338 - csv:101222132 433.721