Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0052 | ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTTCAGCCGACTCACATGCACAGGTCGTTGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAACTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCCGGAGACGAGGCTGAGGCTGAGGCTGGGGCAGAGGCGGAAGCCGAGAGAGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCAAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCACTCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCGTCTTCTTCGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTACTGTGCAGCGCCCCTCGATGGCCATTAACCCGTGGGCAGTGTTACCAATTCAACGTTGA | 882 | 52.38 | MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRSLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLTPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSASAATTTRHPAAATVQRPSMAINPWAVLPIQR | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 523969 | 525991 | + | CcPI632755_05g000520.1 | Cco05g0052 | 177680 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0052 | 293 | FunFam | Homeobox-leucine zipper protein 18 | 125 | 201 | - | - | |
Cco05g0052 | 293 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 7 | 272 | IPR050762 | - | |
Cco05g0052 | 293 | ProSitePatterns | 'Homeobox' domain signature. | 171 | 194 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco05g0052 | 293 | MobiDBLite | consensus disorder prediction | 98 | 141 | - | - | |
Cco05g0052 | 293 | Pfam | Homeodomain | 140 | 194 | IPR001356 | GO:0003677(InterPro) | |
Cco05g0052 | 293 | Gene3D | - | 133 | 201 | - | - | |
Cco05g0052 | 293 | Pfam | HD-ZIP protein N terminus | 1 | 101 | IPR006712 | GO:0005634(InterPro) | |
Cco05g0052 | 293 | SMART | HOX_1 | 138 | 200 | IPR001356 | GO:0003677(InterPro) | |
Cco05g0052 | 293 | Coils | Coil | 202 | 232 | - | - | |
Cco05g0052 | 293 | Pfam | Homeobox associated leucine zipper | 196 | 230 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0052 | 293 | MobiDBLite | consensus disorder prediction | 80 | 96 | - | - | |
Cco05g0052 | 293 | SMART | halz | 196 | 239 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0052 | 293 | SUPERFAMILY | Homeodomain-like | 126 | 197 | IPR009057 | - | |
Cco05g0052 | 293 | ProSiteProfiles | 'Homeobox' domain profile. | 136 | 196 | IPR001356 | GO:0003677(InterPro) | |
Cco05g0052 | 293 | CDD | homeodomain | 140 | 197 | IPR001356 | GO:0003677(InterPro) | |
Cco05g0052 | 293 | MobiDBLite | consensus disorder prediction | 71 | 141 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0052 | Cco-Chr5:523969 | Cco10g0249 | Cco-Chr10:2652289 | 1.50E-72 | dispersed | |
Cco05g0052 | Cco-Chr5:523969 | Cco09g0363 | Cco-Chr9:3298066 | 4.30E-48 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59188 | PF04618 | HD-ZIP_N | 3.70E-31 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0052 | K09338 | - | csv:101222132 | 433.721 |