Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0063 ATGAACGGCAAAACTCCGGCCACGAGGACTCGTGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGCGAGGGAACTTTTGCTAAGGTCAAGTTCGCGAAGAACGTTGAGAATGGTGATTATGTCGCCATTAAGATTCTCGATCGTGAAAAAGTTCTTCGCCACAGGATGGTCGAACAGATCAAAAGAGAGATTTCGACTCTGAAAGTGATCAAGCATCCGAATGTTTGTAAGATTTATGAGGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAGATAGCCGCAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCAGCAACTTATAAATGCTGTAGATTACTGCCATAGTAGAGGCGTCTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGATTCACATGATGTTCTTAAAGTGTCAGATTTTGGATTGAGTGCATTTTCGCAGCAAGTGCGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACACCAAACTACGTAGCTCCTGAGGTCTTCAATGATAAAGGTTATGATGGTACATCATCAGATATTTGGTCATGCGGGGTTATTCTCTTTGTTCTTATGGCTGGCTTCTTGCCTTTTGACGAGCCAAATCTAATGTGTTTGTACAGAAAAATTTCAAATGCTGATTTTTCCTTTCCATCATGGTTCTCAAGTGGTGCAAGAAAACTAGTTTGCCGCATTCTTGATCCAGACCCTATTAATCGAATAACGATAGCCGAAATTCAAGAAGATCCATGGTTCAAGGAGGGCTACACACCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTAGATGCCGCTTTTAGCAGCTCAAAGGAACATCTTGTGACCGAAAGAAAAGAGAAGCCAGTGTCCATGAATGCTTTCGAGCTTATCTCTAGGTCACCTGGTTTTAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCGTTTTACTTCGCAAAGCCCTGCAAACGAGATCATGTCGAAGATTGAGGAAACTGCAAAACCAATGGGGTTCAATGTACGAAAACGGGACTACAAGATGAAGTTGCAAGGTGACAAAACTGGGAGGAAAGGACACCTCTCTATAGCCACTGAGGTGTTTGAGGTGGCTCCTTCATTGCATATGGTCGAGCTTCGGAAAACAGGGGGCGATACGCTCGAGTTTCACAAGGCATGTCATCAGTATTCTTAG 1272 43.71 MNGKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREKVLRHRMVEQIKREISTLKVIKHPNVCKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFNDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMCLYRKISNADFSFPSWFSSGARKLVCRILDPDPINRITIAEIQEDPWFKEGYTPAHFEVEEDITLDDVDAAFSSSKEHLVTERKEKPVSMNAFELISRSPGFSLENLFEKQKAVAKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKACHQYS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 584971 589648 - CcPI632755_05g000630.1 Cco05g0063 177691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0063 423 FunFam Non-specific serine/threonine protein kinase 8 310 - -
Cco05g0063 423 CDD STKc_SnRK3 14 269 - -
Cco05g0063 423 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Cco05g0063 423 FunFam Non-specific serine/threonine protein kinase 306 423 - -
Cco05g0063 423 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Cco05g0063 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0063 423 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Cco05g0063 423 SMART serkin_6 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0063 423 Gene3D Kinase associated domain 1, KA1 306 423 - -
Cco05g0063 423 SUPERFAMILY Protein kinase-like (PK-like) 12 298 IPR011009 -
Cco05g0063 423 CDD CIPK_C 313 419 - -
Cco05g0063 423 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Cco05g0063 423 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
Cco05g0063 423 Pfam NAF domain 309 369 IPR004041 GO:0007165(InterPro)
Cco05g0063 423 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco05g0063 423 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0063 423 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2264 Cco-Chr4:36186438 Cco05g0063 Cco-Chr5:584971 2.00E-170 dispersed
Cco05g0063 Cco-Chr5:584971 Cco06g1297 Cco-Chr6:23194179 7.40E-134 dispersed
Cco05g0063 Cco-Chr5:584971 Cco03g0793 Cco-Chr3:8354474 8.60E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86805 PF00069 Pkinase 1.10E-71 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0063 - - - 0.0