Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0080 ATGTGCCTTCAGTTCGCAACCAACATTGGGCTTCCTTGGTGTCCTCCTTCAAAGCTTTTGTTTTTTGTCATCTCCGTCACCGTTATGTTGGAGATGTTCAGGAAGATTTTAATTTTAAAGTTTCCAACAACGTTGAGAAGAGATGTCCTCTTCGGACAATCAAATATGATCAATCTCCTTCCTGCTTCATTCGTCAATCCCTCTTTTATTCACAATCCTGATTCGATTTTCATTTCCCTTTTCGTCTTTTTGCCCCATTCCGGATCCGAAGCAATTTCTCCAGGGGAATTTGTTTATGGTATGGAAACAGGGCCTGCCACTTCTAACCATTCATCGTCATTGCCCTTTGTTATGGAATGCCGATTTCGCTTGCAATCGGCATTCGATTCTTTTTGCATTGTGTCCGAAGCCTTTTCCGAGCATCGTCGTTGTCGAATTCCGATCTGGCGACATGCTTTTTCTAGCAAAAATGAGTGCTTAGCTGATCCCATTAGTGCGTTATTTGGAAGTATGGAGTCTCCTGATACTGTTGCTGAGAAAGATCCTACCGGTCGATACGTTCGGTACGATGAAATCCTGGGAAGGGGCGCTTTCAAGACAGTTTACAAGGCATTTGACGAAGTGGATGGAATTGAAGTTGCCTGGAACCAAGTTAGGATTGATGGTTTCTTGCAGTCACCTGAGGATTTAGAAAAGTTGTACTCCGAAGTACATCTACTTAAATCATTAAAACATGAGAATATTATCAAGTTCTACAATTCTTGGGTGGATGATAAGAAGAAAACAGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATACCGTAAAAAGCATAAAAATGTTGATATGAAGGCCATAAAGAACTGGGCGCGACAGGTTCTCCGAGGGTTGGTCTATCTTCACAGTCATGATCCCCCCATTATTCATAGAGATTTGAAAGGTGATAACATTTTTATTAATGGAAATCATGGAGAAGTTAAGATTGGAGATCTTGGACTAGCGATCGTTATGCAGCAGCCTACTGCTCGAAGTGTAATTGGAACTCCTGAGTTCATGGCTCCTGAGCTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTTACCTTTGAGTATCCATATAATGAATGTAAAAATCCAGCTCAGATCTTTAGGAAAGTTACATCTGGTATTAAGCCTGCTTCCCTTGCTAAGGTGAGTGATCCACAGACTATGGGGTTCATCAATAAATGTTTGGTTCCAGCGCATGAGAGGTTGTCTGCAAAAGAGCTTCTTAAAGATTCATTCCTTCAAGTTGAGAACCCAAAGGAATCAGCGCGCAATCCCCTACAGCTACCTATCCAGGTTCCTAAATCAATGAATTTGCCAAAGAGTGGACCTATCTCCATGGACATTGACATTGACCACAAACAACATTCTTTGAGCACTTGTGCTGAAAGCAATAGTGGGAGTCCACACTTTCCAGTTGTGGAGTTCCAGACAATGAATAAGAACAACGAGTTCAGGTTACGTGGAAATAAGAATGATGAAAACTCCGTGGCATTAACCTTGCGTATTGCAGACTCAAATGGTCGAGTGAGGAATATACATTTTACATTTTATCTCGATTCTGATACTGCACTATCAGTAGCAGCTGAAATGGCTGAACAATTGGAGTTGATAAATCATGATGTGGATTTCATAGCTGAATTTATTGATTTTTTGATAACAAAGCTTATACCTGGTTGGAAGCCCTTGTCTGTTAATTCCTCAAATGGAGAATCGAGTCTTTGCGGCGGTCCCCCCATCCTCAAAAGTGTGAAATCATCTATTGGATCTCCATGGGGTTCAATGTCAACTGGGATTCATGATGGGTTGGTCGAACAAGACATTTCCTCTGTGTTAGTGTGTAGTACTCAAAAGGATTGTCTGCAATCTGAGCGAGATGGCTGGGCTGACGATATTCCCAGTAGTCACATTTTTGATACTTGCCCTTCTTCTCCCAGTTTGGCTAATTTTGAGGACTTGAATTCAAACGCTTCATTTGCGTCAGAGTTACTGGTCGAAGATTGCTCTACCAAAAGTTCTAAGGTGTTTGATTGCTCCAATATTGATGGAAGTTCAAAAGGCTCGAGCTGGTCGATTGGGGAACTAGAGCCCCACGGTTCATCATATGTTGAAGAAAAATTGCAAAGAAATGTTAGTGATGTTGGAATCGTCACTCCCATGGATTATTTTGTGAAGAACTCGGTGGTGTCATTGCCTGCTCCAAGTGAAGCATCTAATGTGATGAGCTTGACAAGCAGTTGTTCTTCGTTATCGTTTGCGGACAAGGATCTCGATGCTGAACTCAAGATGGAAATCAATGCTATCGAGACACATTATCGGCAACTGTTTGACGAGCTATCACGAATGAGAGAGGAGGCACTAGAGGCCACCAGAAAGAGATGGATTGCAAAGAAGAAACTGATTCATTGA 2499 41.9 MCLQFATNIGLPWCPPSKLLFFVISVTVMLEMFRKILILKFPTTLRRDVLFGQSNMINLLPASFVNPSFIHNPDSIFISLFVFLPHSGSEAISPGEFVYGMETGPATSNHSSSLPFVMECRFRLQSAFDSFCIVSEAFSEHRRCRIPIWRHAFSSKNECLADPISALFGSMESPDTVAEKDPTGRYVRYDEILGRGAFKTVYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQVLRGLVYLHSHDPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYNECKNPAQIFRKVTSGIKPASLAKVSDPQTMGFINKCLVPAHERLSAKELLKDSFLQVENPKESARNPLQLPIQVPKSMNLPKSGPISMDIDIDHKQHSLSTCAESNSGSPHFPVVEFQTMNKNNEFRLRGNKNDENSVALTLRIADSNGRVRNIHFTFYLDSDTALSVAAEMAEQLELINHDVDFIAEFIDFLITKLIPGWKPLSVNSSNGESSLCGGPPILKSVKSSIGSPWGSMSTGIHDGLVEQDISSVLVCSTQKDCLQSERDGWADDIPSSHIFDTCPSSPSLANFEDLNSNASFASELLVEDCSTKSSKVFDCSNIDGSSKGSSWSIGELEPHGSSYVEEKLQRNVSDVGIVTPMDYFVKNSVVSLPAPSEASNVMSLTSSCSSLSFADKDLDAELKMEINAIETHYRQLFDELSRMREEALEATRKRWIAKKKLIH 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 706460 712466 - CcPI632755_05g000800.1 Cco05g0080 177708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0080 832 Gene3D - 525 596 - -
Cco05g0080 832 ProSiteProfiles Protein kinase domain profile. 187 444 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0080 832 Gene3D Phosphorylase Kinase; domain 1 170 268 - -
Cco05g0080 832 FunFam Probable serine/threonine-protein kinase WNK1 172 268 - -
Cco05g0080 832 Gene3D Transferase(Phosphotransferase) domain 1 270 449 - -
Cco05g0080 832 SUPERFAMILY Protein kinase-like (PK-like) 189 483 IPR011009 -
Cco05g0080 832 SMART serkin_6 187 444 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0080 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0080 832 CDD STKc_WNK 185 444 - -
Cco05g0080 832 Pfam Protein kinase domain 190 444 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0080 832 FunFam probable serine/threonine-protein kinase WNK9 270 449 - -
Cco05g0080 832 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 172 818 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cco05g0080 832 Coils Coil 795 822 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0163 Cco-Chr1:1536923 Cco05g0080 Cco-Chr5:706460 6.90E-176 dispersed
Cco03g0316 Cco-Chr3:3523355 Cco05g0080 Cco-Chr5:706460 7.30E-138 dispersed
Cco05g0080 Cco-Chr5:706460 Cco06g0628 Cco-Chr6:6951084 5.90E-127 dispersed
Cco05g0080 Cco-Chr5:706460 Cco02g1766 Cco-Chr2:30431794 7.00E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86806 PF00069 Pkinase 2.30E-52 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0080 K08867 - csv:101204101 1198.73