Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0080 | ATGTGCCTTCAGTTCGCAACCAACATTGGGCTTCCTTGGTGTCCTCCTTCAAAGCTTTTGTTTTTTGTCATCTCCGTCACCGTTATGTTGGAGATGTTCAGGAAGATTTTAATTTTAAAGTTTCCAACAACGTTGAGAAGAGATGTCCTCTTCGGACAATCAAATATGATCAATCTCCTTCCTGCTTCATTCGTCAATCCCTCTTTTATTCACAATCCTGATTCGATTTTCATTTCCCTTTTCGTCTTTTTGCCCCATTCCGGATCCGAAGCAATTTCTCCAGGGGAATTTGTTTATGGTATGGAAACAGGGCCTGCCACTTCTAACCATTCATCGTCATTGCCCTTTGTTATGGAATGCCGATTTCGCTTGCAATCGGCATTCGATTCTTTTTGCATTGTGTCCGAAGCCTTTTCCGAGCATCGTCGTTGTCGAATTCCGATCTGGCGACATGCTTTTTCTAGCAAAAATGAGTGCTTAGCTGATCCCATTAGTGCGTTATTTGGAAGTATGGAGTCTCCTGATACTGTTGCTGAGAAAGATCCTACCGGTCGATACGTTCGGTACGATGAAATCCTGGGAAGGGGCGCTTTCAAGACAGTTTACAAGGCATTTGACGAAGTGGATGGAATTGAAGTTGCCTGGAACCAAGTTAGGATTGATGGTTTCTTGCAGTCACCTGAGGATTTAGAAAAGTTGTACTCCGAAGTACATCTACTTAAATCATTAAAACATGAGAATATTATCAAGTTCTACAATTCTTGGGTGGATGATAAGAAGAAAACAGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATACCGTAAAAAGCATAAAAATGTTGATATGAAGGCCATAAAGAACTGGGCGCGACAGGTTCTCCGAGGGTTGGTCTATCTTCACAGTCATGATCCCCCCATTATTCATAGAGATTTGAAAGGTGATAACATTTTTATTAATGGAAATCATGGAGAAGTTAAGATTGGAGATCTTGGACTAGCGATCGTTATGCAGCAGCCTACTGCTCGAAGTGTAATTGGAACTCCTGAGTTCATGGCTCCTGAGCTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTTACCTTTGAGTATCCATATAATGAATGTAAAAATCCAGCTCAGATCTTTAGGAAAGTTACATCTGGTATTAAGCCTGCTTCCCTTGCTAAGGTGAGTGATCCACAGACTATGGGGTTCATCAATAAATGTTTGGTTCCAGCGCATGAGAGGTTGTCTGCAAAAGAGCTTCTTAAAGATTCATTCCTTCAAGTTGAGAACCCAAAGGAATCAGCGCGCAATCCCCTACAGCTACCTATCCAGGTTCCTAAATCAATGAATTTGCCAAAGAGTGGACCTATCTCCATGGACATTGACATTGACCACAAACAACATTCTTTGAGCACTTGTGCTGAAAGCAATAGTGGGAGTCCACACTTTCCAGTTGTGGAGTTCCAGACAATGAATAAGAACAACGAGTTCAGGTTACGTGGAAATAAGAATGATGAAAACTCCGTGGCATTAACCTTGCGTATTGCAGACTCAAATGGTCGAGTGAGGAATATACATTTTACATTTTATCTCGATTCTGATACTGCACTATCAGTAGCAGCTGAAATGGCTGAACAATTGGAGTTGATAAATCATGATGTGGATTTCATAGCTGAATTTATTGATTTTTTGATAACAAAGCTTATACCTGGTTGGAAGCCCTTGTCTGTTAATTCCTCAAATGGAGAATCGAGTCTTTGCGGCGGTCCCCCCATCCTCAAAAGTGTGAAATCATCTATTGGATCTCCATGGGGTTCAATGTCAACTGGGATTCATGATGGGTTGGTCGAACAAGACATTTCCTCTGTGTTAGTGTGTAGTACTCAAAAGGATTGTCTGCAATCTGAGCGAGATGGCTGGGCTGACGATATTCCCAGTAGTCACATTTTTGATACTTGCCCTTCTTCTCCCAGTTTGGCTAATTTTGAGGACTTGAATTCAAACGCTTCATTTGCGTCAGAGTTACTGGTCGAAGATTGCTCTACCAAAAGTTCTAAGGTGTTTGATTGCTCCAATATTGATGGAAGTTCAAAAGGCTCGAGCTGGTCGATTGGGGAACTAGAGCCCCACGGTTCATCATATGTTGAAGAAAAATTGCAAAGAAATGTTAGTGATGTTGGAATCGTCACTCCCATGGATTATTTTGTGAAGAACTCGGTGGTGTCATTGCCTGCTCCAAGTGAAGCATCTAATGTGATGAGCTTGACAAGCAGTTGTTCTTCGTTATCGTTTGCGGACAAGGATCTCGATGCTGAACTCAAGATGGAAATCAATGCTATCGAGACACATTATCGGCAACTGTTTGACGAGCTATCACGAATGAGAGAGGAGGCACTAGAGGCCACCAGAAAGAGATGGATTGCAAAGAAGAAACTGATTCATTGA | 2499 | 41.9 | MCLQFATNIGLPWCPPSKLLFFVISVTVMLEMFRKILILKFPTTLRRDVLFGQSNMINLLPASFVNPSFIHNPDSIFISLFVFLPHSGSEAISPGEFVYGMETGPATSNHSSSLPFVMECRFRLQSAFDSFCIVSEAFSEHRRCRIPIWRHAFSSKNECLADPISALFGSMESPDTVAEKDPTGRYVRYDEILGRGAFKTVYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQVLRGLVYLHSHDPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYNECKNPAQIFRKVTSGIKPASLAKVSDPQTMGFINKCLVPAHERLSAKELLKDSFLQVENPKESARNPLQLPIQVPKSMNLPKSGPISMDIDIDHKQHSLSTCAESNSGSPHFPVVEFQTMNKNNEFRLRGNKNDENSVALTLRIADSNGRVRNIHFTFYLDSDTALSVAAEMAEQLELINHDVDFIAEFIDFLITKLIPGWKPLSVNSSNGESSLCGGPPILKSVKSSIGSPWGSMSTGIHDGLVEQDISSVLVCSTQKDCLQSERDGWADDIPSSHIFDTCPSSPSLANFEDLNSNASFASELLVEDCSTKSSKVFDCSNIDGSSKGSSWSIGELEPHGSSYVEEKLQRNVSDVGIVTPMDYFVKNSVVSLPAPSEASNVMSLTSSCSSLSFADKDLDAELKMEINAIETHYRQLFDELSRMREEALEATRKRWIAKKKLIH | 832 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 706460 | 712466 | - | CcPI632755_05g000800.1 | Cco05g0080 | 177708 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0080 | 832 | Gene3D | - | 525 | 596 | - | - | |
Cco05g0080 | 832 | ProSiteProfiles | Protein kinase domain profile. | 187 | 444 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0080 | 832 | Gene3D | Phosphorylase Kinase; domain 1 | 170 | 268 | - | - | |
Cco05g0080 | 832 | FunFam | Probable serine/threonine-protein kinase WNK1 | 172 | 268 | - | - | |
Cco05g0080 | 832 | Gene3D | Transferase(Phosphotransferase) domain 1 | 270 | 449 | - | - | |
Cco05g0080 | 832 | SUPERFAMILY | Protein kinase-like (PK-like) | 189 | 483 | IPR011009 | - | |
Cco05g0080 | 832 | SMART | serkin_6 | 187 | 444 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0080 | 832 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 311 | 323 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g0080 | 832 | CDD | STKc_WNK | 185 | 444 | - | - | |
Cco05g0080 | 832 | Pfam | Protein kinase domain | 190 | 444 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0080 | 832 | FunFam | probable serine/threonine-protein kinase WNK9 | 270 | 449 | - | - | |
Cco05g0080 | 832 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 172 | 818 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Cco05g0080 | 832 | Coils | Coil | 795 | 822 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0163 | Cco-Chr1:1536923 | Cco05g0080 | Cco-Chr5:706460 | 6.90E-176 | dispersed | |
Cco03g0316 | Cco-Chr3:3523355 | Cco05g0080 | Cco-Chr5:706460 | 7.30E-138 | dispersed | |
Cco05g0080 | Cco-Chr5:706460 | Cco06g0628 | Cco-Chr6:6951084 | 5.90E-127 | dispersed | |
Cco05g0080 | Cco-Chr5:706460 | Cco02g1766 | Cco-Chr2:30431794 | 7.00E-128 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86806 | PF00069 | Pkinase | 2.30E-52 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0080 | K08867 | - | csv:101204101 | 1198.73 |