Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0096 | ATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGAAGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGGCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAACAAGCTGTCGGATCTGGTAGAGAGACCAAACGCTTCCAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCTAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGGGATCCTAGGGATGGAGAGGAAACAGAATCTACACAGATTCTTAGTCTCCGGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTAGACAGACTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCGTCCGGGAAACATACCTGGCTTTCAGATGTGCTCAATTTGCCATCTGAATATTGTGTGAGATCATACCTGGCGAAATCTGCGGGAATTCGGACGATTGTTTTGGTGCCGACTGATGTTGGAGTAGTTGAATTGGGTTCTGTTAGATCCGTGAATGAGAGCTTAGAGTTAGTGCAGCTGATCAGATCATTGTTTTCATCCCAACTTTCACTAGACAGAGTTAGGTCATCAGCGGCGATGTCGATGATGGCTGAAAGAAAAGATGAAAGCACCCCATTTGCGAGTTTGGGAATTGCAGAAAGAGGAGGAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGATCATGGGAAGCATGTGCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAATGGCATTCGCAGTCCGAATTTGGCACATGTTCATGGTCTCAAGCAGGGGAATCCTGCAGAAATTTATGGCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCAGCTAGTTAATGGAGTCAGAGATGATTTTTGTCTCAATCCATATCAATCACAAAAGCTGGCCCAAATGCAAATTGATTTCTCAGCAGCAACATCAAGGCCTTCTGTGATTAACCATGTAATAGCAGATACGGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACCGACGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCAAATGGTAGGGAGGAACCACTAAATCATGTTGAGGCAGAGAGGCAGCGGCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAAATGGACAAAGCTTCACTGCTGGGAGATGCCATTGCTTACATAAACGAGCTTCAAGAAAAAGTGAAGGCCATGGAATTTGAACGTGAGAAATCCGGCCTCACCTCAAGTGATGCAACCCCTTCGGAGGGGAACCCAGAAATAATTGAAAATAAAGAACAATTCCTTGACCTCGACATTGAGGTCGAGGCTGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTCTCTGAAGCAAATGATAAAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCCGAGCAGTTGACGAAGGAACAGTTTATAGCTGCATTTTCCCGGGACTCCACTTCGTTACATCCTTTATCAACAGTTGGAAGTTTTGATTTACAACAGTTAGCTTTAAAAGTTGAAGGACCAACTTGGAAGTAA | 1908 | 45.13 | MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMACSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETESTQILSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRLTDTEMFFLASMYFSFPRGEGGPGKCLASGKHTWLSDVLNLPSEYCVRSYLAKSAGIRTIVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQLSLDRVRSSAAMSMMAERKDESTPFASLGIAERGGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPNLAHVHGLKQGNPAEIYGSPTPPVNNNHEQQLVNGVRDDFCLNPYQSQKLAQMQIDFSAATSRPSVINHVIADTEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKAMEFEREKSGLTSSDATPSEGNPEIIENKEQFLDLDIEVEAAHDEVIVKVSCPLESHPASRVIKAMKDAQINVVDSKLSEANDKVLHTFVIKSPGSEQLTKEQFIAAFSRDSTSLHPLSTVGSFDLQQLALKVEGPTWK | 635 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 823003 | 826037 | + | CcPI632755_05g000960.1 | Cco05g0096 | 177724 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0096 | 635 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 445 | 503 | IPR036638 | GO:0046983(InterPro) | |
Cco05g0096 | 635 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 442 | 491 | IPR011598 | GO:0046983(InterPro) | |
Cco05g0096 | 635 | MobiDBLite | consensus disorder prediction | 408 | 453 | - | - | |
Cco05g0096 | 635 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 52 | 240 | IPR025610 | - | |
Cco05g0096 | 635 | MobiDBLite | consensus disorder prediction | 407 | 453 | - | - | |
Cco05g0096 | 635 | FunFam | Transcription factor bHLH13 | 435 | 508 | - | - | |
Cco05g0096 | 635 | Pfam | Helix-loop-helix DNA-binding domain | 446 | 492 | IPR011598 | GO:0046983(InterPro) | |
Cco05g0096 | 635 | CDD | bHLH_AtAIB_like | 439 | 512 | - | - | |
Cco05g0096 | 635 | PANTHER | MYC | 41 | 607 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER) | |
Cco05g0096 | 635 | Gene3D | - | 435 | 506 | IPR036638 | GO:0046983(InterPro) | |
Cco05g0096 | 635 | SMART | finulus | 448 | 497 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1564 | Cco-Chr4:31016318 | Cco05g0096 | Cco-Chr5:823003 | 4.80E-12 | dispersed | |
Cco05g0096 | Cco-Chr5:823003 | Cco07g0081 | Cco-Chr7:822859 | 4.20E-72 | dispersed | |
Cco05g0096 | Cco-Chr5:823003 | Cco10g0168 | Cco-Chr10:1645807 | 9.30E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59191 | PF14215 | bHLH-MYC_N | 4.80E-54 | CL0161 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0096 | - | - | - | 0.0 |