Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0096 ATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGAAGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGGCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAACAAGCTGTCGGATCTGGTAGAGAGACCAAACGCTTCCAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCTAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGGGATCCTAGGGATGGAGAGGAAACAGAATCTACACAGATTCTTAGTCTCCGGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTAGACAGACTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCGTCCGGGAAACATACCTGGCTTTCAGATGTGCTCAATTTGCCATCTGAATATTGTGTGAGATCATACCTGGCGAAATCTGCGGGAATTCGGACGATTGTTTTGGTGCCGACTGATGTTGGAGTAGTTGAATTGGGTTCTGTTAGATCCGTGAATGAGAGCTTAGAGTTAGTGCAGCTGATCAGATCATTGTTTTCATCCCAACTTTCACTAGACAGAGTTAGGTCATCAGCGGCGATGTCGATGATGGCTGAAAGAAAAGATGAAAGCACCCCATTTGCGAGTTTGGGAATTGCAGAAAGAGGAGGAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGATCATGGGAAGCATGTGCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAATGGCATTCGCAGTCCGAATTTGGCACATGTTCATGGTCTCAAGCAGGGGAATCCTGCAGAAATTTATGGCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCAGCTAGTTAATGGAGTCAGAGATGATTTTTGTCTCAATCCATATCAATCACAAAAGCTGGCCCAAATGCAAATTGATTTCTCAGCAGCAACATCAAGGCCTTCTGTGATTAACCATGTAATAGCAGATACGGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACCGACGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCAAATGGTAGGGAGGAACCACTAAATCATGTTGAGGCAGAGAGGCAGCGGCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAAATGGACAAAGCTTCACTGCTGGGAGATGCCATTGCTTACATAAACGAGCTTCAAGAAAAAGTGAAGGCCATGGAATTTGAACGTGAGAAATCCGGCCTCACCTCAAGTGATGCAACCCCTTCGGAGGGGAACCCAGAAATAATTGAAAATAAAGAACAATTCCTTGACCTCGACATTGAGGTCGAGGCTGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTCTCTGAAGCAAATGATAAAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCCGAGCAGTTGACGAAGGAACAGTTTATAGCTGCATTTTCCCGGGACTCCACTTCGTTACATCCTTTATCAACAGTTGGAAGTTTTGATTTACAACAGTTAGCTTTAAAAGTTGAAGGACCAACTTGGAAGTAA 1908 45.13 MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMACSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETESTQILSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRLTDTEMFFLASMYFSFPRGEGGPGKCLASGKHTWLSDVLNLPSEYCVRSYLAKSAGIRTIVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQLSLDRVRSSAAMSMMAERKDESTPFASLGIAERGGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPNLAHVHGLKQGNPAEIYGSPTPPVNNNHEQQLVNGVRDDFCLNPYQSQKLAQMQIDFSAATSRPSVINHVIADTEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKAMEFEREKSGLTSSDATPSEGNPEIIENKEQFLDLDIEVEAAHDEVIVKVSCPLESHPASRVIKAMKDAQINVVDSKLSEANDKVLHTFVIKSPGSEQLTKEQFIAAFSRDSTSLHPLSTVGSFDLQQLALKVEGPTWK 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 823003 826037 + CcPI632755_05g000960.1 Cco05g0096 177724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0096 635 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 445 503 IPR036638 GO:0046983(InterPro)
Cco05g0096 635 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 442 491 IPR011598 GO:0046983(InterPro)
Cco05g0096 635 MobiDBLite consensus disorder prediction 408 453 - -
Cco05g0096 635 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Cco05g0096 635 MobiDBLite consensus disorder prediction 407 453 - -
Cco05g0096 635 FunFam Transcription factor bHLH13 435 508 - -
Cco05g0096 635 Pfam Helix-loop-helix DNA-binding domain 446 492 IPR011598 GO:0046983(InterPro)
Cco05g0096 635 CDD bHLH_AtAIB_like 439 512 - -
Cco05g0096 635 PANTHER MYC 41 607 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Cco05g0096 635 Gene3D - 435 506 IPR036638 GO:0046983(InterPro)
Cco05g0096 635 SMART finulus 448 497 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1564 Cco-Chr4:31016318 Cco05g0096 Cco-Chr5:823003 4.80E-12 dispersed
Cco05g0096 Cco-Chr5:823003 Cco07g0081 Cco-Chr7:822859 4.20E-72 dispersed
Cco05g0096 Cco-Chr5:823003 Cco10g0168 Cco-Chr10:1645807 9.30E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59191 PF14215 bHLH-MYC_N 4.80E-54 CL0161 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0096 - - - 0.0