Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0109 ATGCCCAAGTTAATGGGTTCTCAGATACCAAAATCTGTAAGGTTTGGACATCCAACTGCTGGAGGTTACCATTACAGAAGCAGACTGTCTCCAGGGTCAATATTGGAAAGCATAGAGAGAAAATTTTCAAGTGTTTCTAATAGCTTTAGAAGGATAATAACACACTTAGGCTTCAAGCATCCAGGTGATCAGTCAGTAAAGAAACCAAAATTTTGGAAGAAAATTCTTGATCCACATAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCATCTGTCATAGCAGTAGCTGTGGATCCTCTCTTCTTTTACGTCCCAGTGATCGATGCACAACGTCAATGCCTAACCATGGACCGACAACTTATGATCATTGCTTGTGTTCTTCGTTCATTCATTGATTTATTTTATCTACTTCACATGATCTTTGAATTTCGAACCGGTTTTCTTCCCCCTTCTTTACCGGTTTTTGGAAGTGGTGAATTAATCAAAGATCCAGCAAAAATAGCAAAGAAATATCTCTTCTCAAACTTCTTGATCGATATCTTATCCATTCTCCCACTACCTCAGCTTTTGGTATTAGCAATCGTACCTGCAGCGAAAGGCTCAACTGCCTTGAAGACAAAGAACGTCGTGAAGACTGCAGTTCTTTTGCAATATGTTCCAAGACTTCTCCGAATTTATCCACTATACAGAGAAGTAACCAGAACTTCTGGCATACTCACAGAAACAGCCTGGAGTGGAGCTGCCTTCAATCTCCTCATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAGCCAAATGCTGGCTCCAAGCATGCAGCAAAGATGAATGTATTGACAATTTTCTGTACTGTGGAGATCGTAAAAAACAAATCTCCCAGTCTATAAATGAGTTTTGCTCTCCTAAAGAGTCTGAAGATGGAAAGAGCTTCGAGTTTGGGATGTATGTTGAAGCCCTCAAGTTTAACTTAACCGAGACGACAAGTTTTCGCCGCAAATTCTGCTATTCCTTCTGGTGGGCTCTGCGAAATGTCGGCTCTAGCGGACAAAACCTTGATGTAGGCAATTACATGGGGGAGGTTTTTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTATTCGCGTTACTCATTAGCAATATTCAGAAATATCTGCAGTCAACAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGACGCTGAGCATTGGATGGCACATCGTATGCTCCCAGAGGGGTTGAGGCAGCGTATTCGACGATATGATCAGTACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATCAGTAACCTTCCTAAAGACCTCAGAAGAGACATCAAACGCCACCTTTGCTTGGCCCATCTTAAGAAAGTGCCACTTTTTAACAGCATGGATAAACAACTGTTGGACGCAATGTGCGAATATCTCAAGCCTGTGTTATTCACGGAGAAGAGCTTCATTCTGCAAGATGGCGACCCAATTGATATGATGCTATTTATTATGAAAGGAAAGTTGGCTACCATTATTACTTGTGATTGGAAAAACGACCCGTACTCGGCCACGCTTAATGCTGGTGACTTCTGTGGCGAAGAGCTAGTTCAATGGGCAATGGATCCCACCTCCACCAGTTCTCTACCTATTTCACAAAGAACAGTTAAAACTCTAACTGAGGTTGAAGCCTTTTCTCTAAAGGCTAATGAGCTGAAATCTGTAACTAGTCAGTTCCACTTTCAGCGCCTTAATAGAAAGCAATTCCAACGCTCAGTGAGGTTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTACACAATACAAGAAGCTTGGCATGATTACCGAGAAAGAAGGCGGAGAGGGGGTGGAGATGGCAGGTTTCAAGATGCATTAGCTAAAACATTTGGCGCCTCGGCGAGCTTTAGTGCCACTCTGTATGCATCCATATTCATATCGCATCTACTGCAAGCTGTGCAGCGAGATCAACACCAGCAAACTGCCCAAGTCACACGAGTGATGACACTACCGCCACCTCCGAAGCCAGACGATGAGCAAGACAAGCCAAATTTCACCATCTTGGATCTTTAA 2127 42.5 MPKLMGSQIPKSVRFGHPTAGGYHYRSRLSPGSILESIERKFSSVSNSFRRIITHLGFKHPGDQSVKKPKFWKKILDPHKPFLQQWNKIFVLSSVIAVAVDPLFFYVPVIDAQRQCLTMDRQLMIIACVLRSFIDLFYLLHMIFEFRTGFLPPSLPVFGSGELIKDPAKIAKKYLFSNFLIDILSILPLPQLLVLAIVPAAKGSTALKTKNVVKTAVLLQYVPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIERQAKCWLQACSKDECIDNFLYCGDRKKQISQSINEFCSPKESEDGKSFEFGMYVEALKFNLTETTSFRRKFCYSFWWALRNVGSSGQNLDVGNYMGEVFFAVFIAILGLVLFALLISNIQKYLQSTTVKIEQMRINRRDAEHWMAHRMLPEGLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKRHLCLAHLKKVPLFNSMDKQLLDAMCEYLKPVLFTEKSFILQDGDPIDMMLFIMKGKLATIITCDWKNDPYSATLNAGDFCGEELVQWAMDPTSTSSLPISQRTVKTLTEVEAFSLKANELKSVTSQFHFQRLNRKQFQRSVRFYSHQWKVWAAYTIQEAWHDYRERRRRGGGDGRFQDALAKTFGASASFSATLYASIFISHLLQAVQRDQHQQTAQVTRVMTLPPPPKPDDEQDKPNFTILDL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 893362 896875 - CcPI632755_05g001090.1 Cco05g0109 177737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0109 708 MobiDBLite consensus disorder prediction 693 708 - -
Cco05g0109 708 Gene3D Jelly Rolls 474 592 IPR014710 -
Cco05g0109 708 Gene3D - 89 400 - -
Cco05g0109 708 Gene3D Helix hairpin bin 402 467 - -
Cco05g0109 708 FunFam Cyclic nucleotide-gated ion channel 1 403 467 - -
Cco05g0109 708 MobiDBLite consensus disorder prediction 686 708 - -
Cco05g0109 708 SUPERFAMILY cAMP-binding domain-like 406 592 IPR018490 -
Cco05g0109 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 669 - -
Cco05g0109 708 ProSiteProfiles cAMP/cGMP binding motif profile. 476 559 IPR000595 -
Cco05g0109 708 CDD CAP_ED 476 608 IPR000595 -
Cco05g0109 708 Pfam Ion transport protein 92 401 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g0109 708 SUPERFAMILY Voltage-gated potassium channels 77 398 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0109 Cco-Chr5:893362 Cco05g0113 Cco-Chr5:904597 5.10E-196 dispersed
Cco05g0109 Cco-Chr5:893362 Cco05g0112 Cco-Chr5:902394 6.80E-15 proximal
Cco05g0109 Cco-Chr5:893362 Cco05g0110 Cco-Chr5:899780 6.30E-61 tandem
Cco01g0051 Cco-Chr1:383331 Cco05g0109 Cco-Chr5:893362 3.50E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0109 K05391 - csv:101206492 1150.96