Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0113 ATGGATATGCAATGCACGCCCACACAATACAATGTCTGTAGCGACACAGGGAGTGGGAGAGAGCAAAGGAGTTCTGTGTACAAAATGCCTCTACAACTCCAACGAGGTAGCCAAAACTGGGTTATTTGGGGATTGATTGACTTCAGCAATATCTACAGTTTTTTTGGTTCTTTGTGGGACATTGTTATTTCACAGACAGCACCAGAGAAACCAGAGACCCCCCCTTTCTTATACCAAAATCTGTTTGGACATCCAACTTCTGATTTTCATGACAGATATGGAGGTTGCCAAAGCCGAAGCGGACCGTCTCTAGGGTCAATATTGACAAGCATAAAGAGCAGATTTTCAAGTGTTTCTGATAGCTTTAGAAGAATAATAACATGCTTAGGCTTCAAGCATCCAGGTGATCAGTCGGTAAAGAAACCAAAATTTTGGAAGAAAATTCTTGATCCACATAAGCCATTTCCTCAGCAATGGAACAAGATATTTGTGTTCTCCTCTGTCATAGCGGTAGCTGTGGGTCCTCTCTTCTTTTACATCCTAGTGATCGATGAAAACCGTTATTGCCTAACCATGGACCAACAACTTATGATCATTGCTTGTGTTCTTCGTACACTCGTTGACTTATTTTATCAGATTCACATAATCTTTGATTTTCGAACCGGTTTTCTTCCCCTTTTTTTACCGGTTTTTGGAAGTGGTGAACTAAAGAAAGATCCAGCAGATATAGCACAGAAATATCTCTCCTCAAACTTCTTGATCGATATCTTATCCATTCTCCCACTGCCTCAGCTTTCGGTATTAGCAACCGTAACTGCAGCGAAACGCCCGATTCTACTGAAGACAAAGGACGTCGTGAAGATTGCAAAACAGCCTGGAGTTGAGCTGCCTTCAATCTCCTCATTTATATGCAAGCTAGTCATAGATCAAAGAAGACAAATATACTCGTCTATAAATGAGTTTTGCTCTCCTAAAAAGTCTGAAGATGGCAAGAACTTCAACTTTGGGATGTTTGGTGAAGCCCTTAAGTTCCAATTGACCATGACGACGAATTTTCGCGGGAAATTATTCTATTCCTTTTGGTGGGCTCTGCAAAATGTCAGCTCTAGTGGACAAAACCTTACAGTAAGCAATTACATGGGGGAGGTTTTTTTTGCTGTCTTCATTCCCATCCTTGGTTTGGTTTTATTTGCGTTACTCATTAGCAATATTCAGAAATATCTGCAGTCAACAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGACGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGAGTTGAGGCAGCATATACGACGATATGATCAGTATAAATGGCAGCTAAATAGGGGAGTTAAGGAAGAGGAACTCATCAGTAACCTTCCTAAAGACCTCAGGAGGGACATCAAACACCACCTTTGCTTGGCCCATCTTAAGAAAGTGCCGCTTTTTAGTAGCATGGATAAACAACTGTTGGACTCAATGCGTGAATATCTCCAGCCTGTGTTATTCACAAAAAGAGCTTCATTCTGCAAGAGGTTCTACTCTCATCAATGGAAAGTTCGGGCAGCCTACAAAATACAAGAAGTTTGGCATGATTACTGTGAAAGAAAGCGAAGGGGGAGTGGAGCTGGCAGATTTCAAGATGCATTAGCTAAAACATTTGGCGCCTCAGCGAGCTTCAGTGCCACTCTGTATGCATCCATATTCATATCCCATCTACTGCAAGCAGTGAAGCGAGATCAACCCAGCTAA 1767 41.94 MDMQCTPTQYNVCSDTGSGREQRSSVYKMPLQLQRGSQNWVIWGLIDFSNIYSFFGSLWDIVISQTAPEKPETPPFLYQNLFGHPTSDFHDRYGGCQSRSGPSLGSILTSIKSRFSSVSDSFRRIITCLGFKHPGDQSVKKPKFWKKILDPHKPFPQQWNKIFVFSSVIAVAVGPLFFYILVIDENRYCLTMDQQLMIIACVLRTLVDLFYQIHIIFDFRTGFLPLFLPVFGSGELKKDPADIAQKYLSSNFLIDILSILPLPQLSVLATVTAAKRPILLKTKDVVKIAKQPGVELPSISSFICKLVIDQRRQIYSSINEFCSPKKSEDGKNFNFGMFGEALKFQLTMTTNFRGKLFYSFWWALQNVSSSGQNLTVSNYMGEVFFAVFIPILGLVLFALLISNIQKYLQSTTVKIEQMRINRRDAEHWMAHRMLPEELRQHIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHLCLAHLKKVPLFSSMDKQLLDSMREYLQPVLFTKRASFCKRFYSHQWKVRAAYKIQEVWHDYCERKRRGSGAGRFQDALAKTFGASASFSATLYASIFISHLLQAVKRDQPS 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 904597 909427 - CcPI632755_05g001130.1 Cco05g0113 177741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0113 588 Gene3D Helix hairpin bin 414 478 - -
Cco05g0113 588 SUPERFAMILY Voltage-gated potassium channels 151 409 - -
Cco05g0113 588 FunFam Cyclic nucleotide-gated ion channel 1 414 478 - -
Cco05g0113 588 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 300 511 - -
Cco05g0113 588 SUPERFAMILY cAMP-binding domain-like 417 511 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0109 Cco-Chr5:893362 Cco05g0113 Cco-Chr5:904597 5.10E-196 dispersed
Cco05g0110 Cco-Chr5:899780 Cco05g0113 Cco-Chr5:904597 1.80E-31 dispersed
Cco05g0113 Cco-Chr5:904597 Cco10g1454 Cco-Chr10:27664234 2.00E-76 dispersed
Cco05g0111 Cco-Chr5:900849 Cco05g0113 Cco-Chr5:904597 1.30E-47 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0113 K05391 - csv:101206736 347.051