Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0135 ATGGGAACTAGTGAAGAGGCGAAGTCTGTGAAGACTGAAAAACCATCCTCACCAACACCGGATCAGAACAGTGTGCCGAATTCAGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTGGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGCTCCACCACAGATGATTCCTCCATATGGTACTCCTTATGCTGCAATCTATTCTCATGGAGGTGTTTATGCCCATCCTGCAGTTTCTATGGGACCGCATTCACATGGCCCTGGTATTCCCTCATCACCTGGGGCTGCCCCTCCTTTGAGTATTGAAACACCTTCAAAGGTATCTGGAAATAGCAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGATGGCCTGGCAATGTCCATAGGCAATGTTGGCACTGAGACTGCTGAAGGGGGAGCTGAGCATGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCACAAGGAAACGAAGCCGTGAGGGAACACCTACCACTGGTAAGGATGCAAAAATTGAGCCACAGGCAAGTCCAGTTACTGCTGCTGAAATGAATGAAAGCTCTAGCAAATTATTGGGCACGACCAAAGCAGCTAATGCGACTGGAAAACTTGGATCTGTGATTTCTCCTGGAATGTCTACTGCATTGGAACTGAGAAATCCTTCCAGTATAAATGCCATGACAAGTCCAACGACGGTTCCACCTTGTTCAGTACTGCCTTCTGAAGTCTGGCTCCAGAATGAAAAAGAGCTAAAACGGGAAAGGAGAAAACAGTCTAATAGAGAATCCGCTAGGAGGTCAAGGTTGAGGAAGCAGGCTGAGACAGAGGAACTAGCTCGTAAAGTTGATTCGCTGACTGCCGAGAATGTCGCTATTCGATCTGAAATAAGCAGATTGTCAGAGAACTCCGAGAAACTTAAGAAAGAAAACTCTACCTTGATGGAAAAGCTTAAAAGCGCTCAATCAGGACGAACAGAAGCATTAGACATGAATGAAAAGAGGATGCAACAACCTGTAAGCACAGAAACCAAAGGACCTGTGAATAAAAGCATTAACGAAGAGAGTATCATCTGCAAGAAAAACTCGAGTTCGGGTGCAAAACTGCGGCAGCTCTTGGATACGAGTCCAAGGGCGGATGCAGTCGCTGCTAGCTAA 1254 46.25 MGTSEEAKSVKTEKPSSPTPDQNSVPNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWAPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGIPSSPGAAPPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVGTETAEGGAEHGQSESMETEGSSDGSDGTTAGANQTTRKRSREGTPTTGKDAKIEPQASPVTAAEMNESSSKLLGTTKAANATGKLGSVISPGMSTALELRNPSSINAMTSPTTVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKKENSTLMEKLKSAQSGRTEALDMNEKRMQQPVSTETKGPVNKSINEESIICKKNSSSGAKLRQLLDTSPRADAVAAS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1089703 1092981 + CcPI632755_05g001350.1 Cco05g0135 177763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0135 417 SUPERFAMILY Leucine zipper domain 284 340 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0135 417 MobiDBLite consensus disorder prediction 153 241 - -
Cco05g0135 417 MobiDBLite consensus disorder prediction 282 312 - -
Cco05g0135 417 Coils Coil 301 356 - -
Cco05g0135 417 MobiDBLite consensus disorder prediction 1 29 - -
Cco05g0135 417 CDD bZIP_plant_GBF1 286 334 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0135 417 MobiDBLite consensus disorder prediction 166 193 - -
Cco05g0135 417 Pfam Disordered region downstream of MFMR 132 263 - -
Cco05g0135 417 MobiDBLite consensus disorder prediction 332 381 - -
Cco05g0135 417 MobiDBLite consensus disorder prediction 367 381 - -
Cco05g0135 417 MobiDBLite consensus disorder prediction 13 29 - -
Cco05g0135 417 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Cco05g0135 417 Pfam bZIP transcription factor 281 343 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0135 417 FunFam G-box binding factor 3 284 339 - -
Cco05g0135 417 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 283 346 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0135 417 SMART brlzneu 281 345 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0135 417 MobiDBLite consensus disorder prediction 213 241 - -
Cco05g0135 417 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 288 303 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0135 417 Gene3D - 284 337 - -
Cco05g0135 417 PANTHER G-BOX-BINDING FACTOR 3-RELATED 14 375 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Cco05g0135 417 MobiDBLite consensus disorder prediction 103 134 - -
Cco05g0135 417 MobiDBLite consensus disorder prediction 395 417 - -
Cco05g0135 417 MobiDBLite consensus disorder prediction 332 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0135 Cco-Chr5:1089703 Cco10g0134 Cco-Chr10:1220216 5.00E-26 dispersed
Cco05g0135 Cco-Chr5:1089703 Cco09g1167 Cco-Chr9:11316447 7.00E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59194 PF16596 MFMR_assoc 9.30E-21 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0135 K09060 - csv:101213720 722.235