Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0161 ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCACCATTATTCCCTCTTCTTCTTCTTCTGTTTCTTCGTCTTCCAATAACTCCATTCCTTTTTCTTTTACCAGAGACCTAACCAACCAAACAAAAAGTCATTTCTTCTCCCTTCAAGATCCATTTCAACCCCCAAATTGCAATTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCACAAGCAACAACAGAGCACCCATCTCCCCAAACAGCTCCATTCAACCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGTCTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGCTGCATGGCCCGAAAACAAGTCGAGAGGAATAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGATGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGCACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGAAGAGTTTCCGGCGAGTTTCGACCTTCCATGGTTGTTTAACGGAAACCCAGACAGCGAAATTGTAAAACTCCCCTGTTAA 993 50.25 MEVDWDLHAVVRGYSAVPSAATIIPSSSSSVSSSSNNSIPFSFTRDLTNQTKSHFFSLQDPFQPPNCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQQQSTHLPKQLHSTPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTMPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSEEFPASFDLPWLFNGNPDSEIVKLPC 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1259122 1260295 - CcPI632755_05g001610.1 Cco05g0161 177789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0161 330 MobiDBLite consensus disorder prediction 107 129 - -
Cco05g0161 330 SMART WRKY_cls 152 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0161 330 FunFam WRKY transcription factor 22 136 206 - -
Cco05g0161 330 SUPERFAMILY WRKY DNA-binding domain 150 213 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0161 330 Gene3D WRKY domain 136 206 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0161 330 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 269 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cco05g0161 330 ProSiteProfiles WRKY domain profile. 147 213 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0161 330 MobiDBLite consensus disorder prediction 207 276 - -
Cco05g0161 330 MobiDBLite consensus disorder prediction 79 145 - -
Cco05g0161 330 MobiDBLite consensus disorder prediction 210 237 - -
Cco05g0161 330 Pfam WRKY DNA -binding domain 154 211 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0161 330 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0091 Cco-Chr1:704282 Cco05g0161 Cco-Chr5:1259122 2.10E-43 dispersed
Cco03g0867 Cco-Chr3:10274534 Cco05g0161 Cco-Chr5:1259122 4.80E-37 dispersed
Cco04g2328 Cco-Chr4:36737386 Cco05g0161 Cco-Chr5:1259122 1.30E-38 dispersed
Cco05g0161 Cco-Chr5:1259122 Cco07g0839 Cco-Chr7:19409511 4.10E-39 dispersed
Cco05g0159 Cco-Chr5:1236545 Cco05g0161 Cco-Chr5:1259122 1.50E-11 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59197 PF03106 WRKY 4.40E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0161 K13425 - csv:101217082 484.567