Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0161 | ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCACCATTATTCCCTCTTCTTCTTCTTCTGTTTCTTCGTCTTCCAATAACTCCATTCCTTTTTCTTTTACCAGAGACCTAACCAACCAAACAAAAAGTCATTTCTTCTCCCTTCAAGATCCATTTCAACCCCCAAATTGCAATTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCACAAGCAACAACAGAGCACCCATCTCCCCAAACAGCTCCATTCAACCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGTCTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGCTGCATGGCCCGAAAACAAGTCGAGAGGAATAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGATGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGCACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGAAGAGTTTCCGGCGAGTTTCGACCTTCCATGGTTGTTTAACGGAAACCCAGACAGCGAAATTGTAAAACTCCCCTGTTAA | 993 | 50.25 | MEVDWDLHAVVRGYSAVPSAATIIPSSSSSVSSSSNNSIPFSFTRDLTNQTKSHFFSLQDPFQPPNCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQQQSTHLPKQLHSTPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTMPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSEEFPASFDLPWLFNGNPDSEIVKLPC | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1259122 | 1260295 | - | CcPI632755_05g001610.1 | Cco05g0161 | 177789 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0161 | 330 | MobiDBLite | consensus disorder prediction | 107 | 129 | - | - | |
Cco05g0161 | 330 | SMART | WRKY_cls | 152 | 212 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0161 | 330 | FunFam | WRKY transcription factor 22 | 136 | 206 | - | - | |
Cco05g0161 | 330 | SUPERFAMILY | WRKY DNA-binding domain | 150 | 213 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0161 | 330 | Gene3D | WRKY domain | 136 | 206 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0161 | 330 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 5 | 269 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
Cco05g0161 | 330 | ProSiteProfiles | WRKY domain profile. | 147 | 213 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0161 | 330 | MobiDBLite | consensus disorder prediction | 207 | 276 | - | - | |
Cco05g0161 | 330 | MobiDBLite | consensus disorder prediction | 79 | 145 | - | - | |
Cco05g0161 | 330 | MobiDBLite | consensus disorder prediction | 210 | 237 | - | - | |
Cco05g0161 | 330 | Pfam | WRKY DNA -binding domain | 154 | 211 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0161 | 330 | MobiDBLite | consensus disorder prediction | 82 | 101 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0091 | Cco-Chr1:704282 | Cco05g0161 | Cco-Chr5:1259122 | 2.10E-43 | dispersed | |
Cco03g0867 | Cco-Chr3:10274534 | Cco05g0161 | Cco-Chr5:1259122 | 4.80E-37 | dispersed | |
Cco04g2328 | Cco-Chr4:36737386 | Cco05g0161 | Cco-Chr5:1259122 | 1.30E-38 | dispersed | |
Cco05g0161 | Cco-Chr5:1259122 | Cco07g0839 | Cco-Chr7:19409511 | 4.10E-39 | dispersed | |
Cco05g0159 | Cco-Chr5:1236545 | Cco05g0161 | Cco-Chr5:1259122 | 1.50E-11 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59197 | PF03106 | WRKY | 4.40E-25 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0161 | K13425 | - | csv:101217082 | 484.567 |