Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0170 ATGAGTTTCTTTAGCACCCAAATTCGCCGGAATCCTCCATTGCTGGGGTTTTCCGATGAGGTCAATGCCCTTAAAACCTCTGATTTGCTTTCCTTAGTTCCTCCTCTTTCCCTCTCTGAATCGATCGAAGAAGAAGAAATGTCAGTTTACGATGCTGCATTTGTGAACACGGAGCTCTCTAAACCCACCTCGATTTTCGGCCTTCGTCTCTGGGTTGTTATCGGAATCTTTGTCGGAGCACTAATAGTTCTCGCACTGTTTCTTCTTTCACTCTGCCTGACTTCTCGCAAGCGGAACCGCCATAAGAACCAAATCCGTTTTCCTAAGTCCACAATCCACCATTCTCCTCCTGCTGTTTCCAAAGAGATCCAGGAGATCGTCCACCACGCCGTGCCGGATCATCATCACCATGTTCAGCCGGAAATTCATGTCGAGATCGGGAAATTGGAGCATCGGGTTGTTTTCTCTGATAGACCTTCTAGTGGTGAGAGTCGAGGCACTGTGAGTGAAACTGCTTCCTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCACACCTCGGTTGGGGCAGATGGTATACTCTCAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAATGTGATTGGAGAAGGTGGATATGGGATCGTATATTTAGGCATTTTAGGAGATGGTACCAGAATTGCTATCAAGAATCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTGGAAGTAGAAGCAATTGGACGCGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATTTAGACCAATGGCTTCATGGCGATGTTGGGGATGTGAGCCCTTTGACGTGGGAGATTCGTGTTAACATCATACTTGGCACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTTCATCGTGATGTAAAATCAAGCAACATACTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCCGAAAGAAGCTATGTGACAACTCGTGTAATGGGCACATTTGGCTATGTTGCACCTGAGTACGCCTGCACTGGAATGTTGAATGAAAAGAGTGATGTTTATAGCTTTGGAATTTTGATTATGGAGATAATTTCCGGGCGGAGCCCTGTTGATTACAGTAGACCTCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAAGCAATGGTTGGTGACAGAAAATCGGAGGAAGTGGTTGACCCCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTCAAACGTGTTTTGCTGGTTGCTCTTCGTTGTGTTGATCCTGATGCTACAAAGAGGCCGAAAATGGGACACGTCATTCACATGCTCGAGGCAGATAATTTGCTGTCTCATGATGAACACCGGGTTGGTAAGGACTCTTCTCATTCAATTCAAGGCCATCAACATGAGAACCGGGCCGTTCCAAGACGAGTTAACAATCAGAAAGATGAACAGGCATCTTCTAATGTATGTGAAGGTGACAGTGATGGAAACATTCACCATCCAACAAGTTTGCTAGAGACATCTCCAACTGTAACCTCTACTTCATGTGCTCTTTTGCTCTGTTCTGACTGGACCAGTAAGGCTAAGATGTGGACTAGAACTGAGGCATTCGCCTTCGAAACCACGACGGGATTTTGTCTGATCTTCACGTTAGGCTGCCCGAAGTCTCATCCTAAGCTGGCTCCTTTGGGAGTTCCTTCAAAACCCACTTATCCAAAGCTTGCTTTTAGAAGTTGGGGCCAAGTGTTATGCATCAAAGGTGAAGTTGAAACAAGCACAAAGCACCTGGTAGCTGTAGTTAATACTTGGAAGGTTTTGGGGCTGTTGTGGGGTCTATTATTGTTAATTTTTTTAAAAAACCTTGGTCGAAGGGGTCAGGCTTGCAAAACGTTTGTGTTCTCTTATTCAAAAAACATTGAGGTTTATAACAAGGTGGCTACAATTGTGAATGATGTGCGAAAGGTTATCACTGGCTTTATCATCAACAATTTACAAATACAGCTCCTCTCATTGCCACCACGCGAGAATTCAACGTTTTCTGGCTGCGATACTTTCTTAGAAATTTCCTTTGCTTTCTTGTTTCTGAATCTGGCCTCTTGGCTGTTTACTGATGTTAGTAGTTGGTGTATCCAGTTCCTTCACCAGTGTTTCACGTCTGCTCTAGATTGGCAAACCTGA 2277 44.88 MSFFSTQIRRNPPLLGFSDEVNALKTSDLLSLVPPLSLSESIEEEEMSVYDAAFVNTELSKPTSIFGLRLWVVIGIFVGALIVLALFLLSLCLTSRKRNRHKNQIRFPKSTIHHSPPAVSKEIQEIVHHAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGTVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSHDEHRVGKDSSHSIQGHQHENRAVPRRVNNQKDEQASSNVCEGDSDGNIHHPTSLLETSPTVTSTSCALLLCSDWTSKAKMWTRTEAFAFETTTGFCLIFTLGCPKSHPKLAPLGVPSKPTYPKLAFRSWGQVLCIKGEVETSTKHLVAVVNTWKVLGLLWGLLLLIFLKNLGRRGQACKTFVFSYSKNIEVYNKVATIVNDVRKVITGFIINNLQIQLLSLPPRENSTFSGCDTFLEISFAFLFLNLASWLFTDVSSWCIQFLHQCFTSALDWQT 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1351734 1363819 + CcPI632755_05g001700.1 Cco05g0170 177798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0170 758 MobiDBLite consensus disorder prediction 157 176 - -
Cco05g0170 758 MobiDBLite consensus disorder prediction 512 526 - -
Cco05g0170 758 CDD STKc_IRAK 210 476 - -
Cco05g0170 758 Pfam Protein tyrosine and serine/threonine kinase 207 474 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0170 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 326 338 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0170 758 MobiDBLite consensus disorder prediction 486 534 - -
Cco05g0170 758 ProSitePatterns Protein kinases ATP-binding region signature. 210 232 IPR017441 GO:0005524(InterPro)
Cco05g0170 758 MobiDBLite consensus disorder prediction 486 511 - -
Cco05g0170 758 SMART serkin_6 204 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0170 758 Gene3D Phosphorylase Kinase; domain 1 186 279 - -
Cco05g0170 758 FunFam Probable serine/threonine-protein kinase At1g01540 184 279 - -
Cco05g0170 758 SUPERFAMILY Protein kinase-like (PK-like) 183 476 IPR011009 -
Cco05g0170 758 PANTHER OS01G0323000 PROTEIN 53 517 IPR052232 -
Cco05g0170 758 MobiDBLite consensus disorder prediction 160 176 - -
Cco05g0170 758 Gene3D Transferase(Phosphotransferase) domain 1 280 492 - -
Cco05g0170 758 ProSiteProfiles Protein kinase domain profile. 204 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0170 758 FunFam Putative receptor-like serine/threonine-protein kinase 280 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0416 Cco-Chr3:4460006 Cco05g0170 Cco-Chr5:1351734 1.10E-53 dispersed
Cco04g1449 Cco-Chr4:29903922 Cco05g0170 Cco-Chr5:1351734 4.20E-167 dispersed
Cco05g0170 Cco-Chr5:1351734 Cco08g1791 Cco-Chr8:29047106 6.10E-171 dispersed
Cco11g0578 Cco-Chr11:6196314 Cco05g0170 Cco-Chr5:1351734 8.90E-50 dispersed
Cco02g0550 Cco-Chr2:5252539 Cco05g0170 Cco-Chr5:1351734 6.30E-142 transposed
Cco05g0170 Cco-Chr5:1351734 Cco05g0998 Cco-Chr5:8815113 7.60E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86809 PF07714 PK_Tyr_Ser-Thr 3.60E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0170 - - - 0.0