Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0175 ATGGCTGGCATAAGGTTCACTGGTTTCTGTTTCAAATCGAGCTCATTACAATCTTTCAAGCCTTACACAAAGATTTCCGAATACGTTGACCGGGTTCTTAGACCGAGTGTTATTCTAAATAAAAGATACTATAAAGATGAATCTCACAGTTTGAAGAGCGCCTCTGCATGGCGTTTACATATCCCTAGTTATGGTACACGTCGCATTGGTACATTTGTGCCCGCATCGTCGTTGAAATACTGGAACACTATCCCTCTTACTTCTCTTGGAAATCTATCAAATTCTCGATTTTATTCATCGGCTTCAGGTAGGAAAGTTGATATAACTGGAGATACTGGTGTTCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATCTTGGAAAGGACTTGCTTGAAAGGGTTAAGGATGTCTGGCAGAGTGCCGTAGATGCAACATCTTATACCGGGCAGAAGGCTAAAGAAGTATCGGATGAATTATCTCCGCATGTAGATAAACTCTTCGATTCACATCCATATCTAAAAAATGTGATTGTTCCTGTAAGTTTGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCCAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTGCTGTTGCCATACTATCTGGAAGCATACCCAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCTTTTTCTCAAATTGGCATGATGGTTGCACCAACTGCAGTAGCACCAGAGTCTGTTTCACAGGCATGCAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCCAGACTTTTGCAGGGCTTGATCGGGACAGGTTACTTACAATTGATAAAGTTTCATCTGTTGCTTTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCCGTTCAATCTATGTTGACAGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGACATTCTTGGTAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCACTTTTAAGTGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTCATTATAAATAAGTCGCGGGCACAATGGCGAGCGATCACAAAGAAAATTCCTTTGCAAGTTGATGATTTCAGTACAGTTTCTCAGATATCAGATGGTATTAAGAATATGCTTATGTCTCACCCTAAGGTGTTCTTGGGCAAAGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTAGGTTGTAACCTTAAGAAAATGGGTAAAGAAGAATTGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACAGATCATTAAGGAGAATGGTGCAACCTTAGGTAGCACCATGTCAGATTGGACGAACAAAAAGGAAAGTCGTTGTGAAATGAAAATAGCTACAGGTTTGTCCAAGGTTGCAACTGATAGAGGGAATGAAAGAGTAAAGATGCTGGTCTGA 1668 41.67 MAGIRFTGFCFKSSSLQSFKPYTKISEYVDRVLRPSVILNKRYYKDESHSLKSASAWRLHIPSYGTRRIGTFVPASSLKYWNTIPLTSLGNLSNSRFYSSASGRKVDITGDTGVPAASAGVEPDISNPPDLGKDLLERVKDVWQSAVDATSYTGQKAKEVSDELSPHVDKLFDSHPYLKNVIVPVSLTLTATLLAWVVMPRLLRRFHKYSMRSAVAILSGSIPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGMMVAPTAVAPESVSQACRGAVILSLVWFIYRWKTNVLSRALATQTFAGLDRDRLLTIDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPLQVDDFSTVSQISDGIKNMLMSHPKVFLGKEAPYCFLSQIESTYAELTLGCNLKKMGKEELFSTEQDILLQSVQIIKENGATLGSTMSDWTNKKESRCEMKIATGLSKVATDRGNERVKMLV 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1386642 1390162 - CcPI632755_05g001750.1 Cco05g0175 177803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0175 555 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 273 354 IPR011014 GO:0016020(InterPro)
Cco05g0175 555 Gene3D - 371 419 IPR023408 -
Cco05g0175 555 Pfam Mechanosensitive ion channel, beta-domain 355 422 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g0175 555 SUPERFAMILY Sm-like ribonucleoproteins 355 420 IPR010920 -
Cco05g0175 555 Gene3D - 269 369 - -
Cco05g0175 555 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 150 528 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0175 K22047 - - csv:101220483 902.894
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0175 . 134 524 Mechanosensitive Ion Channel Family AT4G00290 67.5 4.4e-154 541.6
Cco08g1322 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.1 6.3e-196 681.0
Cco10g0731 . 127 793 Mechanosensitive Ion Channel Family AT5G10490 56.0 9.5e-192 667.2
Cco08g1322 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 56.7 4.4e-197 684.9
Cco10g0731 . 108 570 Mechanosensitive Ion Channel Family AT1G58200 65.5 2.2e-172 602.8
Cco02g1208 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.0 7.4e-261 897.1
Cco02g0422 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Cco02g1208 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.5 5.8e-247 850.9
Cco02g1208 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.6 8.1e-281 963.4
Cco02g0422 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.4 3.5e-268 921.4
Cco02g1208 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 2.4e-237 818.9
Cco02g0422 . 266 936 Mechanosensitive Ion Channel Family AT2G17000 58.2 1.2e-220 763.5
Cco02g1208 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.6 4.9e-164 575.1
Cco05g1797 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.3 1.2e-184 643.7
Cco05g1797 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.3 5.8e-203 704.5
Cco03g1576 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 53.8 6.7e-199 691.0
Cco05g1792 . 69 706 Mechanosensitive Ion Channel Family AT5G12080 50.4 2.4e-164 576.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33