Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0175 ATGGCTGGCATAAGGTTCACTGGTTTCTGTTTCAAATCGAGCTCATTACAATCTTTCAAGCCTTACACAAAGATTTCCGAATACGTTGACCGGGTTCTTAGACCGAGTGTTATTCTAAATAAAAGATACTATAAAGATGAATCTCACAGTTTGAAGAGCGCCTCTGCATGGCGTTTACATATCCCTAGTTATGGTACACGTCGCATTGGTACATTTGTGCCCGCATCGTCGTTGAAATACTGGAACACTATCCCTCTTACTTCTCTTGGAAATCTATCAAATTCTCGATTTTATTCATCGGCTTCAGGTAGGAAAGTTGATATAACTGGAGATACTGGTGTTCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATCTTGGAAAGGACTTGCTTGAAAGGGTTAAGGATGTCTGGCAGAGTGCCGTAGATGCAACATCTTATACCGGGCAGAAGGCTAAAGAAGTATCGGATGAATTATCTCCGCATGTAGATAAACTCTTCGATTCACATCCATATCTAAAAAATGTGATTGTTCCTGTAAGTTTGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCCAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTGCTGTTGCCATACTATCTGGAAGCATACCCAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCTTTTTCTCAAATTGGCATGATGGTTGCACCAACTGCAGTAGCACCAGAGTCTGTTTCACAGGCATGCAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCCAGACTTTTGCAGGGCTTGATCGGGACAGGTTACTTACAATTGATAAAGTTTCATCTGTTGCTTTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCCGTTCAATCTATGTTGACAGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGACATTCTTGGTAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCACTTTTAAGTGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTCATTATAAATAAGTCGCGGGCACAATGGCGAGCGATCACAAAGAAAATTCCTTTGCAAGTTGATGATTTCAGTACAGTTTCTCAGATATCAGATGGTATTAAGAATATGCTTATGTCTCACCCTAAGGTGTTCTTGGGCAAAGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTAGGTTGTAACCTTAAGAAAATGGGTAAAGAAGAATTGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACAGATCATTAAGGAGAATGGTGCAACCTTAGGTAGCACCATGTCAGATTGGACGAACAAAAAGGAAAGTCGTTGTGAAATGAAAATAGCTACAGGTTTGTCCAAGGTTGCAACTGATAGAGGGAATGAAAGAGTAAAGATGCTGGTCTGA 1668 41.67 MAGIRFTGFCFKSSSLQSFKPYTKISEYVDRVLRPSVILNKRYYKDESHSLKSASAWRLHIPSYGTRRIGTFVPASSLKYWNTIPLTSLGNLSNSRFYSSASGRKVDITGDTGVPAASAGVEPDISNPPDLGKDLLERVKDVWQSAVDATSYTGQKAKEVSDELSPHVDKLFDSHPYLKNVIVPVSLTLTATLLAWVVMPRLLRRFHKYSMRSAVAILSGSIPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGMMVAPTAVAPESVSQACRGAVILSLVWFIYRWKTNVLSRALATQTFAGLDRDRLLTIDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPLQVDDFSTVSQISDGIKNMLMSHPKVFLGKEAPYCFLSQIESTYAELTLGCNLKKMGKEELFSTEQDILLQSVQIIKENGATLGSTMSDWTNKKESRCEMKIATGLSKVATDRGNERVKMLV 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1386642 1390162 - CcPI632755_05g001750.1 Cco05g0175 177803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0175 555 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 273 354 IPR011014 GO:0016020(InterPro)
Cco05g0175 555 Gene3D - 371 419 IPR023408 -
Cco05g0175 555 Pfam Mechanosensitive ion channel, beta-domain 355 422 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g0175 555 SUPERFAMILY Sm-like ribonucleoproteins 355 420 IPR010920 -
Cco05g0175 555 Gene3D - 269 369 - -
Cco05g0175 555 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 150 528 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0175 K22047 - csv:101220483 902.894