Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0188 | ATGGCGGTTGTGAGTGCTATGCTAGCAACTACACCTCGAGCTGGTCCAATTAATTATGCTGAAGCCTCACCAATTATGATCAGCTCAAGCAGAGAGATTGTGGAAGAGCCTGTGGGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATTCTCAGGTGGGAAGAGGATTTGCCTCCTACATATTCATGTCCCCGCGCAGATGATTCCATTAATGGGAACCAAGTTTCCAGCAAACTCATTGGAGAAAGAGGAGGTGAGAGCATATCATGAGTTCGAGAAGCAAAATCTGCCGAGGGTCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCGTGCCGATAAATTATGTGCTGAAGCTGAGTGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACAGGATAAATAAACTCATTATGGGAGCAGCTGTAGACAAGAGTTATTCAAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCATTTACGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGACTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATGGAGCTCAAGTAGAAACCGTCATCTCATCACCACAAACAAGTCCAGACGCTGAATCCTCAGAACTTACCCACCGGAGATCTCAGTCACTGCCACTTGAACAGTTTAATAGCAGGGAAGTCGGAACTCCTTCCAATGTACGTCCTAGAGGGAGATCATTGCTTTTTCACCATTTTAGAGGGAGCACACTAGATCCTTCTTCTCCAGATATTATGAGTGGGGTTCATACTGCAAGAAACTTGGATGTTAACGAGGCTATGGGTGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACGCTCTCCTGGTGGTGTGATTGATATGGCTCCGTCCCCACTTTCTAGGGTTGAGTTATGTGCAAATGGGCCGGAGGATGGGAAGACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGCGAAGCATTTTTAGAGGCAATTGCGCGCAGAAAATCTGAGAAAGAAACTGTTAATGCTCTACGCAGGGTTAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGCAAAACTTGAAAGTATAAAGGCACAACTAAATGAACAGATGGAAGAACTCCGGATAGCCCAAGATCAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCTGATCTAACCGCAAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATACAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCAATACCTTCCGCAGTTCTTTACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTCGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGGTAACTTGCGTCATACTATGGTGGCTATAAAAATTCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGTGCCTGTCCTGAAGCTTGGGTTCTCATCTACGAATACCTCTCTAATGGAAGCCTCGAAGATAGGCTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGTATCGCTACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTAAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGCGACTTTGGAATTTGTCGCTTATTGTCTCGGGGTGAAATGCTAAACAACGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATACTTTTGCGGTTATTGACTGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCAATGGCAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCTGAACAGATCGCTCGATTGGCATTGAGGTGTTGTGATATGAAGCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGGGCTTCCTGTGGTGGCCTATTGTCCGTCCAGCTCGGTTCTGCAGAACACTCACATCCTCCCCCTTATTTTATCTGTCCCATCTTCCAGGAAGTCATGCAAGATCCACATGTAGCTGCAGATGGTTTTACATATGAAGCGGAGGCTGTGAGGGGATGGTTAGACAGTGGACACGATACTTCGCCAATGACAAATCTTAGGCTCGAGCACCGCAATCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAAGAGTGGCTCCAACGGAACTGA | 2625 | 44.72 | MAVVSAMLATTPRAGPINYAEASPIMISSSREIVEEPVGAISEDVICVAVGKDVKECLSVLRYALKFSGGKRICLLHIHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVRADKLCAEAECIEKGIVDMISLHRINKLIMGAAVDKSYSRRMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVETVISSPQTSPDAESSELTHRRSQSLPLEQFNSREVGTPSNVRPRGRSLLFHHFRGSTLDPSSPDIMSGVHTARNLDVNEAMGEWGLLTRRSPSERSDNSIRSPGGVIDMAPSPLSRVELCANGPEDGKTSDCLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALRRVRAAEGLYAEELKQRKEVEQELAKEKAKLESIKAQLNEQMEELRIAQDQKASLERDLLESDLTAKELEQKILSAVELLQSYKREREELQIQRDNALREAEELRKNQSTGQYLPQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRGEMLNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGKLESILDPLAGDWPFVQAEQIARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHSHPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN | 874 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1475344 | 1480258 | - | CcPI632755_05g001880.1 | Cco05g0188 | 177816 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0188 | 874 | ProSiteProfiles | Protein kinase domain profile. | 516 | 808 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0188 | 874 | Gene3D | Phosphorylase Kinase; domain 1 | 496 | 588 | - | - | |
Cco05g0188 | 874 | SUPERFAMILY | RING/U-box | 799 | 874 | - | - | |
Cco05g0188 | 874 | ProSiteProfiles | U-box domain profile. | 803 | 874 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco05g0188 | 874 | SMART | Ubox_2 | 807 | 870 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco05g0188 | 874 | Pfam | Protein kinase domain | 521 | 772 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0188 | 874 | ProSitePatterns | Protein kinases ATP-binding region signature. | 522 | 543 | IPR017441 | GO:0005524(InterPro) | |
Cco05g0188 | 874 | Pfam | U-box domain | 805 | 874 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco05g0188 | 874 | PANTHER | OS02G0152300 PROTEIN | 47 | 868 | IPR051348 | - | |
Cco05g0188 | 874 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 634 | 646 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g0188 | 874 | MobiDBLite | consensus disorder prediction | 212 | 257 | - | - | |
Cco05g0188 | 874 | MobiDBLite | consensus disorder prediction | 212 | 252 | - | - | |
Cco05g0188 | 874 | CDD | STK_N | 45 | 198 | - | - | |
Cco05g0188 | 874 | Coils | Coil | 386 | 490 | - | - | |
Cco05g0188 | 874 | CDD | RING-Ubox_WDSUB1-like | 805 | 860 | - | - | |
Cco05g0188 | 874 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 488 | 588 | - | - | |
Cco05g0188 | 874 | Gene3D | Transferase(Phosphotransferase) domain 1 | 589 | 787 | - | - | |
Cco05g0188 | 874 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 802 | 874 | IPR013083 | - | |
Cco05g0188 | 874 | SUPERFAMILY | Protein kinase-like (PK-like) | 490 | 773 | IPR011009 | - | |
Cco05g0188 | 874 | SMART | serkin_6 | 516 | 781 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2156 | Cco-Chr2:34311122 | Cco05g0188 | Cco-Chr5:1475344 | 3.00E-132 | dispersed | |
Cco05g0188 | Cco-Chr5:1475344 | Cco11g0188 | Cco-Chr11:1845996 | 2.50E-91 | dispersed | |
Cco05g0181 | Cco-Chr5:1411521 | Cco05g0188 | Cco-Chr5:1475344 | 2.70E-45 | proximal | |
Cco06g0373 | Cco-Chr6:4173892 | Cco05g0188 | Cco-Chr5:1475344 | 1.30E-230 | transposed | |
Cco07g0210 | Cco-Chr7:2135878 | Cco05g0188 | Cco-Chr5:1475344 | 3.00E-06 | transposed | |
Cco05g0188 | Cco-Chr5:1475344 | Cco05g0980 | Cco-Chr5:8590048 | 9.50E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86811 | PF00069 | Pkinase | 3.10E-42 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0188 | - | - | - | 0.0 |