Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0188 ATGGCGGTTGTGAGTGCTATGCTAGCAACTACACCTCGAGCTGGTCCAATTAATTATGCTGAAGCCTCACCAATTATGATCAGCTCAAGCAGAGAGATTGTGGAAGAGCCTGTGGGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATTCTCAGGTGGGAAGAGGATTTGCCTCCTACATATTCATGTCCCCGCGCAGATGATTCCATTAATGGGAACCAAGTTTCCAGCAAACTCATTGGAGAAAGAGGAGGTGAGAGCATATCATGAGTTCGAGAAGCAAAATCTGCCGAGGGTCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCGTGCCGATAAATTATGTGCTGAAGCTGAGTGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACAGGATAAATAAACTCATTATGGGAGCAGCTGTAGACAAGAGTTATTCAAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCATTTACGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGACTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATGGAGCTCAAGTAGAAACCGTCATCTCATCACCACAAACAAGTCCAGACGCTGAATCCTCAGAACTTACCCACCGGAGATCTCAGTCACTGCCACTTGAACAGTTTAATAGCAGGGAAGTCGGAACTCCTTCCAATGTACGTCCTAGAGGGAGATCATTGCTTTTTCACCATTTTAGAGGGAGCACACTAGATCCTTCTTCTCCAGATATTATGAGTGGGGTTCATACTGCAAGAAACTTGGATGTTAACGAGGCTATGGGTGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACGCTCTCCTGGTGGTGTGATTGATATGGCTCCGTCCCCACTTTCTAGGGTTGAGTTATGTGCAAATGGGCCGGAGGATGGGAAGACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGCGAAGCATTTTTAGAGGCAATTGCGCGCAGAAAATCTGAGAAAGAAACTGTTAATGCTCTACGCAGGGTTAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGCAAAACTTGAAAGTATAAAGGCACAACTAAATGAACAGATGGAAGAACTCCGGATAGCCCAAGATCAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCTGATCTAACCGCAAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATACAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCAATACCTTCCGCAGTTCTTTACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTCGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGGTAACTTGCGTCATACTATGGTGGCTATAAAAATTCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGTGCCTGTCCTGAAGCTTGGGTTCTCATCTACGAATACCTCTCTAATGGAAGCCTCGAAGATAGGCTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGTATCGCTACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTAAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGCGACTTTGGAATTTGTCGCTTATTGTCTCGGGGTGAAATGCTAAACAACGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATACTTTTGCGGTTATTGACTGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCAATGGCAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCTGAACAGATCGCTCGATTGGCATTGAGGTGTTGTGATATGAAGCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGGGCTTCCTGTGGTGGCCTATTGTCCGTCCAGCTCGGTTCTGCAGAACACTCACATCCTCCCCCTTATTTTATCTGTCCCATCTTCCAGGAAGTCATGCAAGATCCACATGTAGCTGCAGATGGTTTTACATATGAAGCGGAGGCTGTGAGGGGATGGTTAGACAGTGGACACGATACTTCGCCAATGACAAATCTTAGGCTCGAGCACCGCAATCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAAGAGTGGCTCCAACGGAACTGA 2625 44.72 MAVVSAMLATTPRAGPINYAEASPIMISSSREIVEEPVGAISEDVICVAVGKDVKECLSVLRYALKFSGGKRICLLHIHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVRADKLCAEAECIEKGIVDMISLHRINKLIMGAAVDKSYSRRMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVETVISSPQTSPDAESSELTHRRSQSLPLEQFNSREVGTPSNVRPRGRSLLFHHFRGSTLDPSSPDIMSGVHTARNLDVNEAMGEWGLLTRRSPSERSDNSIRSPGGVIDMAPSPLSRVELCANGPEDGKTSDCLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALRRVRAAEGLYAEELKQRKEVEQELAKEKAKLESIKAQLNEQMEELRIAQDQKASLERDLLESDLTAKELEQKILSAVELLQSYKREREELQIQRDNALREAEELRKNQSTGQYLPQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRGEMLNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGKLESILDPLAGDWPFVQAEQIARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHSHPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1475344 1480258 - CcPI632755_05g001880.1 Cco05g0188 177816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0188 874 ProSiteProfiles Protein kinase domain profile. 516 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0188 874 Gene3D Phosphorylase Kinase; domain 1 496 588 - -
Cco05g0188 874 SUPERFAMILY RING/U-box 799 874 - -
Cco05g0188 874 ProSiteProfiles U-box domain profile. 803 874 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g0188 874 SMART Ubox_2 807 870 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g0188 874 Pfam Protein kinase domain 521 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0188 874 ProSitePatterns Protein kinases ATP-binding region signature. 522 543 IPR017441 GO:0005524(InterPro)
Cco05g0188 874 Pfam U-box domain 805 874 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g0188 874 PANTHER OS02G0152300 PROTEIN 47 868 IPR051348 -
Cco05g0188 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0188 874 MobiDBLite consensus disorder prediction 212 257 - -
Cco05g0188 874 MobiDBLite consensus disorder prediction 212 252 - -
Cco05g0188 874 CDD STK_N 45 198 - -
Cco05g0188 874 Coils Coil 386 490 - -
Cco05g0188 874 CDD RING-Ubox_WDSUB1-like 805 860 - -
Cco05g0188 874 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 488 588 - -
Cco05g0188 874 Gene3D Transferase(Phosphotransferase) domain 1 589 787 - -
Cco05g0188 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 802 874 IPR013083 -
Cco05g0188 874 SUPERFAMILY Protein kinase-like (PK-like) 490 773 IPR011009 -
Cco05g0188 874 SMART serkin_6 516 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2156 Cco-Chr2:34311122 Cco05g0188 Cco-Chr5:1475344 3.00E-132 dispersed
Cco05g0188 Cco-Chr5:1475344 Cco11g0188 Cco-Chr11:1845996 2.50E-91 dispersed
Cco05g0181 Cco-Chr5:1411521 Cco05g0188 Cco-Chr5:1475344 2.70E-45 proximal
Cco06g0373 Cco-Chr6:4173892 Cco05g0188 Cco-Chr5:1475344 1.30E-230 transposed
Cco07g0210 Cco-Chr7:2135878 Cco05g0188 Cco-Chr5:1475344 3.00E-06 transposed
Cco05g0188 Cco-Chr5:1475344 Cco05g0980 Cco-Chr5:8590048 9.50E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86811 PF00069 Pkinase 3.10E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0188 - - - 0.0