Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0208 ATGCGCCTCTTTCATTCGGAATATCCAACACACCGCAAACGAATCAACGATGAGCCCATCGACCAGCGAAGGGCCATTTCAGTAAAATCCCAAGAAATATCAAAGCCTGCCTGCCGGAGCTTCGTTTTCCGCTCAAGTTTCTCCGCCGCCGACGTCTCACCATTGGTTTCTCAGCCTTCAGCATCGTCTGCCGGCTGCGGTTTCGATTTGATTGCATTACTATGTAGTTTTGTGATCCGTGTGAGCAGTTACTTATCTCATATTCCTGTAACTATGGACTCATCTTGTAATATTTGGAAGCAAAACGTGCTATATGGTAGTGAAAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCAGCAGTGTTCTTAGAAATAGGATTATTGATGCCAAGTTGACTGGCGGTTCAGGAGTAAGTTATAAAGTGCCTAAGAAGAGAAACAGAATTGTAGCATCTAGTAATTCAAATCATGTGAGTCTGGTTTGTGCTAGCAAGTTTGAAGGAGCTTTGCAATATTTTACGCACAAGAGATTCTTGAACTGGAACAATAAGGTAAGTGGAAGAAGGATGGAAATGGTTCATTTAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATGGAAAATGTAAATACTGATGATGAAGGGTCCAGTTTTGGGCCTACCGATGCTGTAGGGTCAGGTGGTTCCGGAGAAGGGGGCGGAGAAGCAGAAACGGTAGAAACGGACATACCGACTGTGGATGAGCTCAGAGAATTGCTGCAAAAGGCCATGAAAGAACTGGAAGTTGCGAGACTTAACAGCACAATGTTCGAGGAGAAGGCCCAAAAAATATCAGAAGCAGCAATAGCTTTGCAAGATGAAGCAACCCGTGCTTGGAATGATGTGAACTCTACTCTCGATTCTGTACAACAGATAGTGAATGAAGAATATGCTGCCAAAGAAGCCGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCTGGCAAAAGGAGGAAACAATTTTCCGGAAAGATCAGTAGATAGTGAGGGGGCAATTGATGGCAAGGAAGAGCAAGAAGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCCGAGCAAATTTGGAAAATTGTGATGCGGAATTGAAGCGCTTAAAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAATGAGTTAGCTGAAAAAGCACAATTGAACGCGTTGAAAGCTGAAGAAGATGTGGCAACAATAATGACTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAGGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTATCAAGTTCTTTTGTTGACACTTCGGACGTCACTCAGGGGTCAAATGTTATTGAAGAAGTTGAGAACGAGGATAACAAGGCAGTTCTAGAAATCTCTGGTGACATTGCTGTTGAAATGGATAGAGAGTTGCCACTTAGTGGTGATTCCTTAGCTATCAAATCTCTACCAGGTAACTTTTCAGATTCTGAAGACTCTGATCAACCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCTGTGAAGGAGGTTGAATCTGGAGCAGAGAAGTCTATTTTGAGTCAAACAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTTTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCCTGGATTTCACTAAAAAGCAATTGCCGAAGCTAATTGTTGGAGCAGTTCTATTAGGAGCAGGGATTGCTATCTTTGCAAATCGAGCAGAAAGGAATTCTCAGATGATTCAGCAGCCTGATGTTGTCACCACTAGTACCGATGAAGTTTCCTTGAACACAAAGCCTTTATTTCAACAATTAAGGAAACTTCCTAAAAGAGTGAAAAAATTAATTTCACAGCTTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTCTTAGACATGTTATGGTTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACCAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCTTGGTTGCTCACATTGTCTGTGGGCAGGCTGGCCCAGCTGCAATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGGCATGGGCGTGCTACATTTTCTGTCTTACTATTCCAGGATTTGGCCGTTGTGGTTTTGCTGATTCTTATACCTCTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTGAAGGCAATAGTTGCTATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTGCTTACTGCCAGGGCTGGACTGTCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACGGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAGTTATCATGGGGTCGTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTTGGTAGATTTTTTGGTATCTCAATTATATCTGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGACTTTCAATGGCCCTTACACCGTGGCTAGCTGCTGGCGGTCAGTTAATTGCTTCTCGATTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACCGACGATTTGCAAGATCATATCATTATTTGCGGATTTGGACGAGTTGGTCAGATAATAGCTCAGCTTCTGTCAGAGCGACTAATTCCCTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCCGTAGGACGTGCCTTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGGTTCTACATAAAGTTGGTGCTGAAAGGGCATGTGCTGCTGCAATAACACTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTTTGAGCAAGTATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGTGCTACTGCGGTAGTTCCCGAGACGTTGGAACCGAGCTTACAGTTGGCTGCTGCTGTTCTTGCTCAGGCTAAACTGCCCATGTCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCCCGACATTTATCTGAGCTGACTGAGCTATGTGAAGCCAGTGGAAGTTCGCTCGGATACGGGTTTTCTCGAATCATGAGCAAACCAAAAGTTCAAACCTCTGATTCTTCAGATGAGAATCAAGTCACTGAAGGAACATTGGCCATATGA 3924 43.45 MRLFHSEYPTHRKRINDEPIDQRRAISVKSQEISKPACRSFVFRSSFSAADVSPLVSQPSASSAGCGFDLIALLCSFVIRVSSYLSHIPVTMDSSCNIWKQNVLYGSERTYCKTLDQFGPSSVLRNRIIDAKLTGGSGVSYKVPKKRNRIVASSNSNHVSLVCASKFEGALQYFTHKRFLNWNNKVSGRRMEMVHLECQSNDSLAFIDGNGRNMENVNTDDEGSSFGPTDAVGSGGSGEGGGEAETVETDIPTVDELRELLQKAMKELEVARLNSTMFEEKAQKISEAAIALQDEATRAWNDVNSTLDSVQQIVNEEYAAKEAVQKATMALSLAEARLQVAIESLELAKGGNNFPERSVDSEGAIDGKEEQEVLLVAQEDIKECRANLENCDAELKRLKSKKEELQKEVDRLNELAEKAQLNALKAEEDVATIMTLAEQAVAFELEAAQRVSDAEIALQKVEKSLSSSFVDTSDVTQGSNVIEEVENEDNKAVLEISGDIAVEMDRELPLSGDSLAIKSLPGNFSDSEDSDQPYYLSDSENGKLSSDSVKEVESGAEKSILSQTKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDFTKKQLPKLIVGAVLLGAGIAIFANRAERNSQMIQQPDVVTTSTDEVSLNTKPLFQQLRKLPKRVKKLISQLPHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLIGGKTILVALVGRFFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGLSMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKVQTSDSSDENQVTEGTLAI 1307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1633729 1647112 + CcPI632755_05g002080.1 Cco05g0208 177836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0208 1307 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1108 1250 IPR036291 -
Cco05g0208 1307 MobiDBLite consensus disorder prediction 522 543 - -
Cco05g0208 1307 FunFam K(+) efflux antiporter 2 chloroplastic 699 1085 - -
Cco05g0208 1307 Coils Coil 254 274 - -
Cco05g0208 1307 Coils Coil 374 429 - -
Cco05g0208 1307 FunFam K(+) efflux antiporter 2 chloroplastic 1107 1271 - -
Cco05g0208 1307 Gene3D - 699 1087 IPR038770 -
Cco05g0208 1307 Gene3D - 1107 1271 - -
Cco05g0208 1307 MobiDBLite consensus disorder prediction 1287 1307 - -
Cco05g0208 1307 Pfam TrkA-N domain 1112 1225 IPR003148 GO:0006813(InterPro)
Cco05g0208 1307 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 710 990 IPR004771 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)
Cco05g0208 1307 Pfam Sodium/hydrogen exchanger family 713 1080 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cco05g0208 1307 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 418 1305 - GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER)
Cco05g0208 1307 MobiDBLite consensus disorder prediction 213 248 - -
Cco05g0208 1307 MobiDBLite consensus disorder prediction 522 583 - -
Cco05g0208 1307 ProSiteProfiles RCK N-terminal domain profile. 1111 1233 IPR003148 GO:0006813(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0208 Cco-Chr5:1633729 Cco09g1854 Cco-Chr9:31700656 2.00E-89 dispersed
Cco05g0208 Cco-Chr5:1633729 Cco08g1878 Cco-Chr8:29805265 1.80E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0208 K03455 - csv:101213081 2046.94