Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0208 | ATGCGCCTCTTTCATTCGGAATATCCAACACACCGCAAACGAATCAACGATGAGCCCATCGACCAGCGAAGGGCCATTTCAGTAAAATCCCAAGAAATATCAAAGCCTGCCTGCCGGAGCTTCGTTTTCCGCTCAAGTTTCTCCGCCGCCGACGTCTCACCATTGGTTTCTCAGCCTTCAGCATCGTCTGCCGGCTGCGGTTTCGATTTGATTGCATTACTATGTAGTTTTGTGATCCGTGTGAGCAGTTACTTATCTCATATTCCTGTAACTATGGACTCATCTTGTAATATTTGGAAGCAAAACGTGCTATATGGTAGTGAAAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCAGCAGTGTTCTTAGAAATAGGATTATTGATGCCAAGTTGACTGGCGGTTCAGGAGTAAGTTATAAAGTGCCTAAGAAGAGAAACAGAATTGTAGCATCTAGTAATTCAAATCATGTGAGTCTGGTTTGTGCTAGCAAGTTTGAAGGAGCTTTGCAATATTTTACGCACAAGAGATTCTTGAACTGGAACAATAAGGTAAGTGGAAGAAGGATGGAAATGGTTCATTTAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATGGAAAATGTAAATACTGATGATGAAGGGTCCAGTTTTGGGCCTACCGATGCTGTAGGGTCAGGTGGTTCCGGAGAAGGGGGCGGAGAAGCAGAAACGGTAGAAACGGACATACCGACTGTGGATGAGCTCAGAGAATTGCTGCAAAAGGCCATGAAAGAACTGGAAGTTGCGAGACTTAACAGCACAATGTTCGAGGAGAAGGCCCAAAAAATATCAGAAGCAGCAATAGCTTTGCAAGATGAAGCAACCCGTGCTTGGAATGATGTGAACTCTACTCTCGATTCTGTACAACAGATAGTGAATGAAGAATATGCTGCCAAAGAAGCCGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCTGGCAAAAGGAGGAAACAATTTTCCGGAAAGATCAGTAGATAGTGAGGGGGCAATTGATGGCAAGGAAGAGCAAGAAGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCCGAGCAAATTTGGAAAATTGTGATGCGGAATTGAAGCGCTTAAAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAATGAGTTAGCTGAAAAAGCACAATTGAACGCGTTGAAAGCTGAAGAAGATGTGGCAACAATAATGACTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAGGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTATCAAGTTCTTTTGTTGACACTTCGGACGTCACTCAGGGGTCAAATGTTATTGAAGAAGTTGAGAACGAGGATAACAAGGCAGTTCTAGAAATCTCTGGTGACATTGCTGTTGAAATGGATAGAGAGTTGCCACTTAGTGGTGATTCCTTAGCTATCAAATCTCTACCAGGTAACTTTTCAGATTCTGAAGACTCTGATCAACCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCTGTGAAGGAGGTTGAATCTGGAGCAGAGAAGTCTATTTTGAGTCAAACAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTTTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCCTGGATTTCACTAAAAAGCAATTGCCGAAGCTAATTGTTGGAGCAGTTCTATTAGGAGCAGGGATTGCTATCTTTGCAAATCGAGCAGAAAGGAATTCTCAGATGATTCAGCAGCCTGATGTTGTCACCACTAGTACCGATGAAGTTTCCTTGAACACAAAGCCTTTATTTCAACAATTAAGGAAACTTCCTAAAAGAGTGAAAAAATTAATTTCACAGCTTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTCTTAGACATGTTATGGTTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACCAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCTTGGTTGCTCACATTGTCTGTGGGCAGGCTGGCCCAGCTGCAATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGGCATGGGCGTGCTACATTTTCTGTCTTACTATTCCAGGATTTGGCCGTTGTGGTTTTGCTGATTCTTATACCTCTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTGAAGGCAATAGTTGCTATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTGCTTACTGCCAGGGCTGGACTGTCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACGGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAGTTATCATGGGGTCGTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTTGGTAGATTTTTTGGTATCTCAATTATATCTGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGACTTTCAATGGCCCTTACACCGTGGCTAGCTGCTGGCGGTCAGTTAATTGCTTCTCGATTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACCGACGATTTGCAAGATCATATCATTATTTGCGGATTTGGACGAGTTGGTCAGATAATAGCTCAGCTTCTGTCAGAGCGACTAATTCCCTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCCGTAGGACGTGCCTTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGGTTCTACATAAAGTTGGTGCTGAAAGGGCATGTGCTGCTGCAATAACACTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTTTGAGCAAGTATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGTGCTACTGCGGTAGTTCCCGAGACGTTGGAACCGAGCTTACAGTTGGCTGCTGCTGTTCTTGCTCAGGCTAAACTGCCCATGTCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCCCGACATTTATCTGAGCTGACTGAGCTATGTGAAGCCAGTGGAAGTTCGCTCGGATACGGGTTTTCTCGAATCATGAGCAAACCAAAAGTTCAAACCTCTGATTCTTCAGATGAGAATCAAGTCACTGAAGGAACATTGGCCATATGA | 3924 | 43.45 | MRLFHSEYPTHRKRINDEPIDQRRAISVKSQEISKPACRSFVFRSSFSAADVSPLVSQPSASSAGCGFDLIALLCSFVIRVSSYLSHIPVTMDSSCNIWKQNVLYGSERTYCKTLDQFGPSSVLRNRIIDAKLTGGSGVSYKVPKKRNRIVASSNSNHVSLVCASKFEGALQYFTHKRFLNWNNKVSGRRMEMVHLECQSNDSLAFIDGNGRNMENVNTDDEGSSFGPTDAVGSGGSGEGGGEAETVETDIPTVDELRELLQKAMKELEVARLNSTMFEEKAQKISEAAIALQDEATRAWNDVNSTLDSVQQIVNEEYAAKEAVQKATMALSLAEARLQVAIESLELAKGGNNFPERSVDSEGAIDGKEEQEVLLVAQEDIKECRANLENCDAELKRLKSKKEELQKEVDRLNELAEKAQLNALKAEEDVATIMTLAEQAVAFELEAAQRVSDAEIALQKVEKSLSSSFVDTSDVTQGSNVIEEVENEDNKAVLEISGDIAVEMDRELPLSGDSLAIKSLPGNFSDSEDSDQPYYLSDSENGKLSSDSVKEVESGAEKSILSQTKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDFTKKQLPKLIVGAVLLGAGIAIFANRAERNSQMIQQPDVVTTSTDEVSLNTKPLFQQLRKLPKRVKKLISQLPHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLIGGKTILVALVGRFFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGLSMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKVQTSDSSDENQVTEGTLAI | 1307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1633729 | 1647112 | + | CcPI632755_05g002080.1 | Cco05g0208 | 177836 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0208 | 1307 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 1108 | 1250 | IPR036291 | - | |
Cco05g0208 | 1307 | MobiDBLite | consensus disorder prediction | 522 | 543 | - | - | |
Cco05g0208 | 1307 | FunFam | K(+) efflux antiporter 2 chloroplastic | 699 | 1085 | - | - | |
Cco05g0208 | 1307 | Coils | Coil | 254 | 274 | - | - | |
Cco05g0208 | 1307 | Coils | Coil | 374 | 429 | - | - | |
Cco05g0208 | 1307 | FunFam | K(+) efflux antiporter 2 chloroplastic | 1107 | 1271 | - | - | |
Cco05g0208 | 1307 | Gene3D | - | 699 | 1087 | IPR038770 | - | |
Cco05g0208 | 1307 | Gene3D | - | 1107 | 1271 | - | - | |
Cco05g0208 | 1307 | MobiDBLite | consensus disorder prediction | 1287 | 1307 | - | - | |
Cco05g0208 | 1307 | Pfam | TrkA-N domain | 1112 | 1225 | IPR003148 | GO:0006813(InterPro) | |
Cco05g0208 | 1307 | NCBIfam | monovalent cation:proton antiporter-2 (CPA2) family protein | 710 | 990 | IPR004771 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro) | |
Cco05g0208 | 1307 | Pfam | Sodium/hydrogen exchanger family | 713 | 1080 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
Cco05g0208 | 1307 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 418 | 1305 | - | GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER) | |
Cco05g0208 | 1307 | MobiDBLite | consensus disorder prediction | 213 | 248 | - | - | |
Cco05g0208 | 1307 | MobiDBLite | consensus disorder prediction | 522 | 583 | - | - | |
Cco05g0208 | 1307 | ProSiteProfiles | RCK N-terminal domain profile. | 1111 | 1233 | IPR003148 | GO:0006813(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0208 | Cco-Chr5:1633729 | Cco09g1854 | Cco-Chr9:31700656 | 2.00E-89 | dispersed | |
Cco05g0208 | Cco-Chr5:1633729 | Cco08g1878 | Cco-Chr8:29805265 | 1.80E-37 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0208 | K03455 | - | csv:101213081 | 2046.94 |