Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0219 ATGAGTTTTCTACCACGATTCCACTCTAGCGGTGCCGGCAGGGGAAACGGTGACGGCCACGGCGACGGCAGTCTTATGGCCGCTGGTGCTATTGCTCAGCCACATCTTGTTGCTCAATCTTCTTTCACTAAATCAATGTTCTCTTCCCCAACGCTCTCTCTCGCTCTCACGAATATCGATGGGCTCGGCGTCGGGGAGATGGTTGCGGCGGATGTTAGGAGGAGGAGTAGAGAGGAAGAGGCAGCGGAGAGTAGATCTGGGAGCGAGAACATGGATGGTGGTTCCGGCGAGGAAGTGGAGGGCAGCGGTGGTAGGAAAAAGAGGAAGAAACGGTACCACCGTCACAGTGTGGAACAGATCCAAGAACTGGAAGCTATGTTTAAAGAGTGTCCTCATCCTGATGAAAAACAACGATTGGAGCTCAGTAGAAGACTCTCTTTAGAAACAAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACTCAATTGGAACGCCATGAGAACACATTACTAAGACAAGAGAACGAGAAGCTCCGAACAGAGAACATGGCAATTCGAGAGGCCATGAGGGATCCAATTTGCTCCAACTGCGGTGGACCAGCCATCATCGGAGAAATCTCCATCGAAGAACAGCAACTCCGAATCGAAAATGCCCGATTAAAGGACGAATTGGACCGAGTGTGTGCCCTAGCGGGGAAATTCCTGGGGCGGGCAGCAGTTCCGGTATCGCCACCATTGGCATCAAGCTCGTGTTTGGAGGAATATGGAGGTGGGATGATGATGATGGAGAGATGCGTGTATTTGGAGATGGGTTTGGCAGCCATGGATGAGGTTGTGAAAATGGCTGATGAGGAAGAGCCACTGTGGGTTAGAGAGAAACTGAATGAAGAAGAATATTTGAGAATGTTCAGTGGGAGTTGTTTTGGGGTTAAACACATTAATAATGGGTTTGTTTTTGAGGCTTCTAGACAAACTGCTCTTGTCTTCCTCAACACTTCAGCTCTCCTTGACACTCTCATGGATCCTGACCGGTGGGTGGAGATGTTTCCGAACCTGGTCGCGACGGCAAGCACCACCGACGTAATCTCTGGTGGCATGGGAGGAACCAGGAACGGAGCTCTCCAACTGATGCATGCAGAGCTTCAAATTCTGTCTCCCATGGTTCCGGTGAGACAATTAAGCTTCCTCCGCTTCTGTAAGCAGCACGCTGAAGGCGTTTGGGTTGTCGTCGATGTCTCCATCGATCCCATTACCGATACTTCTTCCTCTCCCCCGTGCCGGAGACTCCCCTCCGGCTGCGTCATCTACGAGATGCCCAATGGCTACTCCAAGGTTACATGGGTTGAGCATTCTGAATACGATGAAAGTTACATTCACGAGCTATACCGGCCCCTCATTCGCTCCGGCCTTGGCTTTGGTGCTCGACGGTGGATCGCCACGCTTCAACGCCAATCTGAGTGCCTTGCCATCCTCTCCACCCCGATAGACTATTCTGGAATATCAACGAATGGGCGGAGGAGCATGGTGAAGCTAGCGCAGCGGATGACGGTGAATTTTTGTGCAGGAATATGTGGGTCGACGATATACAAATGGAACAAGCTAAACACGAGAAATAACAACGTTGGAGAAGATGTGAGAGTGATGACGAGGAAGAGTGTGGAGGATCCCGGGGAGCCACCGGGGACAGTGCTGAGTGCAGCGACGTCGGTGTGGGTGGCGGAAGCGGCGGAGAGAGTGTTTGAGTTTCTTCGGGATGAGCGGCTGAGGAGTGAGTGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAGATGCTTCATATTCCCAAATCCCAACACCATCAACATCCCAACGCCGTCTCTCTCCTCCGTGCCACCTCTCTAAATCCAAATCAGAGCAGCATGCTAATTCTACAAGAGACTTGCACCGATGCATCGGGGTCGCTTGTAGTGTACGCGCCGGTGGACATTCCGGCCATGCAGGCGGTAATGAACGGTGGAGATTCAGCATACGTGGCCTTATTACCGTCGGGGTTCGCGGTGGTTCCGGCGGCGGAGGACGGTGGCGGAGGGAGTCTGTTGACGGTGGCGTTTCAGATACTGGTGAACAGTTTGCCGACGGATAAGCTGACGGTGGAGTCGGTGGAGACGGTGAATAACTTGATTTCGTGTACGGTGCAAAAAATTAAAACCGCTCTCCGGTGTCACGCGCCTTCCACGTGA 2232 52.2 MSFLPRFHSSGAGRGNGDGHGDGSLMAAGAIAQPHLVAQSSFTKSMFSSPTLSLALTNIDGLGVGEMVAADVRRRSREEEAAESRSGSENMDGGSGEEVEGSGGRKKRKKRYHRHSVEQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENTLLRQENEKLRTENMAIREAMRDPICSNCGGPAIIGEISIEEQQLRIENARLKDELDRVCALAGKFLGRAAVPVSPPLASSSCLEEYGGGMMMMERCVYLEMGLAAMDEVVKMADEEEPLWVREKLNEEEYLRMFSGSCFGVKHINNGFVFEASRQTALVFLNTSALLDTLMDPDRWVEMFPNLVATASTTDVISGGMGGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWVVVDVSIDPITDTSSSPPCRRLPSGCVIYEMPNGYSKVTWVEHSEYDESYIHELYRPLIRSGLGFGARRWIATLQRQSECLAILSTPIDYSGISTNGRRSMVKLAQRMTVNFCAGICGSTIYKWNKLNTRNNNVGEDVRVMTRKSVEDPGEPPGTVLSAATSVWVAEAAERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKSQHHQHPNAVSLLRATSLNPNQSSMLILQETCTDASGSLVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAVVPAAEDGGGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKTALRCHAPST 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1701386 1706328 - CcPI632755_05g002190.1 Cco05g0219 177847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0219 743 MobiDBLite consensus disorder prediction 1 21 - -
Cco05g0219 743 Coils Coil 207 227 - -
Cco05g0219 743 MobiDBLite consensus disorder prediction 73 115 - -
Cco05g0219 743 ProSiteProfiles START domain profile. 264 494 IPR002913 GO:0008289(InterPro)
Cco05g0219 743 SUPERFAMILY Bet v1-like 268 491 - -
Cco05g0219 743 Gene3D - 271 482 IPR023393 -
Cco05g0219 743 SMART START_1 273 491 IPR002913 GO:0008289(InterPro)
Cco05g0219 743 Gene3D - 97 183 - -
Cco05g0219 743 SMART HOX_1 107 170 IPR001356 GO:0003677(InterPro)
Cco05g0219 743 Pfam Homeodomain 109 164 IPR001356 GO:0003677(InterPro)
Cco05g0219 743 CDD homeodomain 116 166 IPR001356 GO:0003677(InterPro)
Cco05g0219 743 CDD START_ArGLABRA2_like 272 490 - -
Cco05g0219 743 FunFam Homeobox-leucine zipper protein HDG1 96 182 - -
Cco05g0219 743 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco05g0219 743 SUPERFAMILY Homeodomain-like 97 166 IPR009057 -
Cco05g0219 743 Coils Coil 160 195 - -
Cco05g0219 743 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 97 738 IPR042160 -
Cco05g0219 743 Pfam START domain 276 490 IPR002913 GO:0008289(InterPro)
Cco05g0219 743 SUPERFAMILY Bet v1-like 509 726 - -
Cco05g0219 743 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0219 Cco-Chr5:1701386 Cco09g1176 Cco-Chr9:11579859 1.80E-143 dispersed
Cco05g0219 Cco-Chr5:1701386 Cco05g0954 Cco-Chr5:8334654 5.20E-215 wgd
Cco05g0219 Cco-Chr5:1701386 Cco06g0006 Cco-Chr6:87865 1.30E-271 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59204 PF01852 START 2.40E-47 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0219 K09338 - csv:101222248 941.414