Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0237 | ATGAGAAACCAAGCCTGGAAAAAAATGGTGAGAGGAAAAACTCAGATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCTTTGAGCTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTTCTAGAGGAAAGCTGTATGAATTTTCAAGCTCAAGCATGCAGGCCACGGTGGGGCGATATCTAAGGCATACAAGATCACAAACCCATCATCTTGAACCTTTAGCTCATCAACACGATTTACAAGCTGTTCAGAATGAGGCTGAAGGTTTGTTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGGATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGCTTAGCTCATGTTAGAGCTAGAAAGCACGAAGTTTACAAGGAACAGATTGAACAACTAAGAGAAAAGGAGAAGAACTTGGAAGCTGAGAATGCAAAGCTAGCTAAAAAGTACTTTGTTGAATGTAAGCCTCAACAATCAGCAACTCAGCAGTTAGCAGAAGTTTCAGCTTGTCCAGAAAGTAGTTCCGTTTCAGACGTTGAAACGGAGTTGTTCATTGGCCCTCCCAAGTCCAGGTCCAACTTGAATAATGACGTCAATAAGAAAAAGAGAGCCACAATGTGTGTGGAGGAAGAGAGGGAATTATTGGCTACCCAATGA | 750 | 42.53 | MRNQAWKKMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSQTHHLEPLAHQHDLQAVQNEAEGLLKEIESLEVSKRKLLGEGLGSSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLREKEKNLEAENAKLAKKYFVECKPQQSATQQLAEVSACPESSSVSDVETELFIGPPKSRSNLNNDVNKKKRATMCVEEERELLATQ | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1844298 | 1851190 | + | CcPI632755_05g002370.1 | Cco05g0237 | 177865 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0237 | 249 | Pfam | K-box region | 93 | 180 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco05g0237 | 249 | Coils | Coil | 97 | 124 | - | - | |
Cco05g0237 | 249 | CDD | MADS_MEF2_like | 11 | 84 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cco05g0237 | 249 | ProSitePatterns | MADS-box domain signature. | 11 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco05g0237 | 249 | SMART | madsneu2 | 9 | 68 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco05g0237 | 249 | Coils | Coil | 131 | 151 | - | - | |
Cco05g0237 | 249 | Coils | Coil | 153 | 180 | - | - | |
Cco05g0237 | 249 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 9 | 201 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco05g0237 | 249 | PRINTS | MADS domain signature | 11 | 31 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco05g0237 | 249 | PRINTS | MADS domain signature | 46 | 67 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco05g0237 | 249 | PRINTS | MADS domain signature | 31 | 46 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco05g0237 | 249 | ProSiteProfiles | MADS-box domain profile. | 9 | 69 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco05g0237 | 249 | ProSiteProfiles | K-box domain profile. | 97 | 188 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco05g0237 | 249 | SUPERFAMILY | SRF-like | 11 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco05g0237 | 249 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 18 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco05g0237 | 249 | FunFam | Agamous-like MADS-box protein AGL13 | 21 | 86 | - | - | |
Cco05g0237 | 249 | Gene3D | - | 21 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco05g0237 | 249 | MobiDBLite | consensus disorder prediction | 217 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0237 | Cco-Chr5:1844298 | Cco06g0024 | Cco-Chr6:245863 | 2.40E-55 | dispersed | |
Cco10g1206 | Cco-Chr10:24739069 | Cco05g0237 | Cco-Chr5:1844298 | 9.60E-28 | transposed | |
Cco01g0335 | Cco-Chr1:3291700 | Cco05g0237 | Cco-Chr5:1844298 | 3.30E-53 | wgd | |
Cco05g0237 | Cco-Chr5:1844298 | Cco05g0928 | Cco-Chr5:8103875 | 4.20E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59207 | PF01486 | K-box | 1.30E-25 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0237 | - | - | - | 0.0 |