Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0237 ATGAGAAACCAAGCCTGGAAAAAAATGGTGAGAGGAAAAACTCAGATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCTTTGAGCTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTTCTAGAGGAAAGCTGTATGAATTTTCAAGCTCAAGCATGCAGGCCACGGTGGGGCGATATCTAAGGCATACAAGATCACAAACCCATCATCTTGAACCTTTAGCTCATCAACACGATTTACAAGCTGTTCAGAATGAGGCTGAAGGTTTGTTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGGATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGCTTAGCTCATGTTAGAGCTAGAAAGCACGAAGTTTACAAGGAACAGATTGAACAACTAAGAGAAAAGGAGAAGAACTTGGAAGCTGAGAATGCAAAGCTAGCTAAAAAGTACTTTGTTGAATGTAAGCCTCAACAATCAGCAACTCAGCAGTTAGCAGAAGTTTCAGCTTGTCCAGAAAGTAGTTCCGTTTCAGACGTTGAAACGGAGTTGTTCATTGGCCCTCCCAAGTCCAGGTCCAACTTGAATAATGACGTCAATAAGAAAAAGAGAGCCACAATGTGTGTGGAGGAAGAGAGGGAATTATTGGCTACCCAATGA 750 42.53 MRNQAWKKMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSQTHHLEPLAHQHDLQAVQNEAEGLLKEIESLEVSKRKLLGEGLGSSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLREKEKNLEAENAKLAKKYFVECKPQQSATQQLAEVSACPESSSVSDVETELFIGPPKSRSNLNNDVNKKKRATMCVEEERELLATQ 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1844298 1851190 + CcPI632755_05g002370.1 Cco05g0237 177865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0237 249 Pfam K-box region 93 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco05g0237 249 Coils Coil 97 124 - -
Cco05g0237 249 CDD MADS_MEF2_like 11 84 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco05g0237 249 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0237 249 SMART madsneu2 9 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0237 249 Coils Coil 131 151 - -
Cco05g0237 249 Coils Coil 153 180 - -
Cco05g0237 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 201 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco05g0237 249 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0237 249 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0237 249 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0237 249 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0237 249 ProSiteProfiles K-box domain profile. 97 188 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco05g0237 249 SUPERFAMILY SRF-like 11 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0237 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0237 249 FunFam Agamous-like MADS-box protein AGL13 21 86 - -
Cco05g0237 249 Gene3D - 21 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0237 249 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0237 Cco-Chr5:1844298 Cco06g0024 Cco-Chr6:245863 2.40E-55 dispersed
Cco10g1206 Cco-Chr10:24739069 Cco05g0237 Cco-Chr5:1844298 9.60E-28 transposed
Cco01g0335 Cco-Chr1:3291700 Cco05g0237 Cco-Chr5:1844298 3.30E-53 wgd
Cco05g0237 Cco-Chr5:1844298 Cco05g0928 Cco-Chr5:8103875 4.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59207 PF01486 K-box 1.30E-25 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0237 - - - 0.0