Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g0237 | ATGAGAAACCAAGCCTGGAAAAAAATGGTGAGAGGAAAAACTCAGATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCTTTGAGCTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTTCTAGAGGAAAGCTGTATGAATTTTCAAGCTCAAGCATGCAGGCCACGGTGGGGCGATATCTAAGGCATACAAGATCACAAACCCATCATCTTGAACCTTTAGCTCATCAACACGATTTACAAGCTGTTCAGAATGAGGCTGAAGGTTTGTTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGGATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGCTTAGCTCATGTTAGAGCTAGAAAGCACGAAGTTTACAAGGAACAGATTGAACAACTAAGAGAAAAGGAGAAGAACTTGGAAGCTGAGAATGCAAAGCTAGCTAAAAAGTACTTTGTTGAATGTAAGCCTCAACAATCAGCAACTCAGCAGTTAGCAGAAGTTTCAGCTTGTCCAGAAAGTAGTTCCGTTTCAGACGTTGAAACGGAGTTGTTCATTGGCCCTCCCAAGTCCAGGTCCAACTTGAATAATGACGTCAATAAGAAAAAGAGAGCCACAATGTGTGTGGAGGAAGAGAGGGAATTATTGGCTACCCAATGA | 750 | 42.53 | MRNQAWKKMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSQTHHLEPLAHQHDLQAVQNEAEGLLKEIESLEVSKRKLLGEGLGSSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLREKEKNLEAENAKLAKKYFVECKPQQSATQQLAEVSACPESSSVSDVETELFIGPPKSRSNLNNDVNKKKRATMCVEEERELLATQ | 249 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1844298 | 1851190 | + | CcPI632755_05g002370.1 | Cco05g0237 | 177865 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g0237 | 249 | Pfam | K-box region | 93 | 180 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Cco05g0237 | 249 | Coils | Coil | 97 | 124 | - | - | |
| Cco05g0237 | 249 | CDD | MADS_MEF2_like | 11 | 84 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Cco05g0237 | 249 | ProSitePatterns | MADS-box domain signature. | 11 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Cco05g0237 | 249 | SMART | madsneu2 | 9 | 68 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Cco05g0237 | 249 | Coils | Coil | 131 | 151 | - | - | |
| Cco05g0237 | 249 | Coils | Coil | 153 | 180 | - | - | |
| Cco05g0237 | 249 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 9 | 201 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Cco05g0237 | 249 | PRINTS | MADS domain signature | 11 | 31 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Cco05g0237 | 249 | PRINTS | MADS domain signature | 46 | 67 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Cco05g0237 | 249 | PRINTS | MADS domain signature | 31 | 46 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Cco05g0237 | 249 | ProSiteProfiles | MADS-box domain profile. | 9 | 69 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Cco05g0237 | 249 | ProSiteProfiles | K-box domain profile. | 97 | 188 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Cco05g0237 | 249 | SUPERFAMILY | SRF-like | 11 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Cco05g0237 | 249 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 18 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Cco05g0237 | 249 | FunFam | Agamous-like MADS-box protein AGL13 | 21 | 86 | - | - | |
| Cco05g0237 | 249 | Gene3D | - | 21 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Cco05g0237 | 249 | MobiDBLite | consensus disorder prediction | 217 | 237 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g0237 | - | - | - | - | 0.0 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g0237 | Cco-Chr5:1844298 | Cco06g0024 | Cco-Chr6:245863 | 2.40E-55 | dispersed | |
| Cco10g1206 | Cco-Chr10:24739069 | Cco05g0237 | Cco-Chr5:1844298 | 9.60E-28 | transposed | |
| Cco01g0335 | Cco-Chr1:3291700 | Cco05g0237 | Cco-Chr5:1844298 | 3.30E-53 | wgd | |
| Cco05g0237 | Cco-Chr5:1844298 | Cco05g0928 | Cco-Chr5:8103875 | 4.20E-44 | wgd |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cco03g0720 | . | 12 | 234 | MADS-box Gene Family | AT3G58780 | 65.5 | 2.1e-75 | 279.3 | |
| Cco04g2193 | . | 44 | 266 | MADS-box Gene Family | AT3G58780 | 63.1 | 4.4e-73 | 271.6 | |
| Cco08g0096 | . | 1 | 222 | MADS-box Gene Family | AT3G58780 | 60.9 | 4.9e-72 | 268.1 | |
| Cco02g1961 | . | 60 | 267 | MADS-box Gene Family | AT3G58780 | 63.2 | 9.8e-65 | 243.8 | |
| Cco01g1749 | . | 1 | 245 | MADS-box Gene Family | AT1G26310 | 56.1 | 1.9e-68 | 256.1 | |
| Cco08g1207 | . | 1 | 178 | MADS-box Gene Family | AT1G26310 | 71.3 | 8.9e-66 | 247.3 | |
| Cco07g1681 | . | 1 | 235 | MADS-box Gene Family | AT1G26310 | 55.5 | 7.0e-63 | 237.7 | |
| Cco08g1206 | . | 1 | 180 | MADS-box Gene Family | AT1G26310 | 54.6 | 1.1e-44 | 177.2 | |
| Cco07g1680 | . | 1 | 173 | MADS-box Gene Family | AT1G26310 | 54.5 | 4.0e-42 | 168.7 | |
| Cco06g0023 | . | 1 | 158 | MADS-box Gene Family | AT1G26310 | 59.2 | 5.3e-42 | 168.3 | |
| Cco01g1750 | . | 1 | 174 | MADS-box Gene Family | AT1G26310 | 54.2 | 7.6e-41 | 164.5 | |
| Cco08g0096 | . | 1 | 223 | MADS-box Gene Family | AT4G09960 | 75.2 | 8.9e-89 | 323.6 | |
| Cco03g0720 | . | 20 | 197 | MADS-box Gene Family | AT4G09960 | 74.7 | 9.5e-67 | 250.4 | |
| Cco04g2193 | . | 46 | 221 | MADS-box Gene Family | AT4G09960 | 74.4 | 9.5e-67 | 250.4 | |
| Cco02g1961 | . | 60 | 216 | MADS-box Gene Family | AT4G09960 | 66.2 | 4.3e-51 | 198.4 | |
| Cco08g0104 | . | 1 | 201 | MADS-box Gene Family | AT1G71692 | 57.6 | 2.5e-58 | 222.2 | |
| Cco06g0023 | . | 1 | 241 | MADS-box Gene Family | AT3G61120 | 56.1 | 6.7e-63 | 237.7 | |
| Cco07g1680 | . | 1 | 173 | MADS-box Gene Family | AT3G61120 | 53.8 | 1.1e-41 | 167.2 | |
| Cco06g0210 | . | 1 | 170 | MADS-box Gene Family | AT3G61120 | 55.8 | 1.9e-41 | 166.4 | |
| Cco01g1749 | . | 1 | 168 | MADS-box Gene Family | AT3G61120 | 51.5 | 3.7e-37 | 152.1 | |
| Cco08g1206 | . | 1 | 173 | MADS-box Gene Family | AT3G61120 | 50.9 | 3.7e-37 | 152.1 | |
| Cco01g0335 | . | 1 | 208 | MADS-box Gene Family | AT4G11880 | 59.2 | 3.8e-57 | 218.4 | |
| Cco05g0237 | . | 9 | 222 | MADS-box Gene Family | AT4G11880 | 53.4 | 1.3e-49 | 193.4 | |
| Cco06g0024 | . | 1 | 218 | MADS-box Gene Family | AT4G11880 | 53.4 | 1.1e-48 | 190.3 | |
| Cco05g0928 | . | 1 | 189 | MADS-box Gene Family | AT4G11880 | 56.5 | 2.7e-42 | 169.1 | |
| Cco01g0562 | . | 1 | 210 | MADS-box Gene Family | AT4G11880 | 51.8 | 7.8e-42 | 167.5 | |
| Cco10g1206 | . | 1 | 249 | MADS-box Gene Family | AT5G13790 | 54.4 | 1.0e-56 | 217.2 | |
| Cco10g0961 | . | 29 | 255 | MADS-box Gene Family | AT2G22630 | 52.0 | 2.2e-55 | 212.6 | |
| Cco04g1582 | . | 1 | 160 | MADS-box Gene Family | AT2G22630 | 67.5 | 1.2e-53 | 206.8 | |
| Cco01g0335 | . | 1 | 210 | MADS-box Gene Family | AT4G22950 | 60.6 | 2.8e-60 | 228.8 | |
| Cco05g0237 | . | 9 | 224 | MADS-box Gene Family | AT4G22950 | 53.3 | 3.7e-52 | 201.8 | |
| Cco06g0024 | . | 1 | 218 | MADS-box Gene Family | AT4G22950 | 54.3 | 3.7e-52 | 201.8 | |
| Cco05g0928 | . | 1 | 189 | MADS-box Gene Family | AT4G22950 | 55.8 | 1.1e-43 | 173.7 | |
| Cco01g0562 | . | 1 | 210 | MADS-box Gene Family | AT4G22950 | 51.6 | 2.6e-42 | 169.1 | |
| Cco08g0096 | . | 1 | 164 | MADS-box Gene Family | AT4G22950 | 51.8 | 2.6e-37 | 152.5 | |
| Cco07g1680 | . | 1 | 246 | MADS-box Gene Family | AT5G15800 | 73.4 | 8.2e-99 | 357.1 | |
| Cco06g0210 | . | 1 | 241 | MADS-box Gene Family | AT5G15800 | 59.8 | 1.2e-73 | 273.5 | |
| Cco01g1750 | . | 1 | 253 | MADS-box Gene Family | AT5G15800 | 53.8 | 5.0e-64 | 241.5 | |
| Cco08g1206 | . | 1 | 173 | MADS-box Gene Family | AT5G15800 | 69.5 | 1.8e-58 | 223.0 | |
| Cco01g1749 | . | 1 | 174 | MADS-box Gene Family | AT5G15800 | 53.4 | 2.4e-42 | 169.5 | |
| Cco07g1681 | . | 1 | 175 | MADS-box Gene Family | AT5G15800 | 54.3 | 9.2e-42 | 167.5 | |
| Cco08g1207 | . | 1 | 176 | MADS-box Gene Family | AT5G15800 | 54.5 | 1.2e-41 | 167.2 | |
| Cco05g0921 | . | 1 | 171 | MADS-box Gene Family | AT5G15800 | 54.0 | 6.6e-40 | 161.4 | |
| Cco06g0024 | . | 1 | 162 | MADS-box Gene Family | AT2G45660 | 71.0 | 8.3e-54 | 206.8 | |
| Cco05g0237 | . | 9 | 168 | MADS-box Gene Family | AT2G45660 | 68.1 | 1.7e-51 | 199.1 | |
| Cco01g0335 | . | 1 | 158 | MADS-box Gene Family | AT2G45660 | 65.8 | 9.5e-50 | 193.4 | |
| Cco01g0562 | . | 1 | 158 | MADS-box Gene Family | AT2G45660 | 65.8 | 2.4e-45 | 178.7 | |
| Cco05g0928 | . | 1 | 157 | MADS-box Gene Family | AT2G45660 | 60.5 | 5.0e-43 | 171.0 | |
| Cco10g0961 | . | 29 | 256 | MADS-box Gene Family | AT4G37940 | 51.8 | 2.7e-55 | 212.2 | |
| Cco04g1582 | . | 1 | 155 | MADS-box Gene Family | AT4G37940 | 67.1 | 2.1e-52 | 202.6 | |
| Cco04g1600 | . | 116 | 338 | MADS-box Gene Family | AT2G22540 | 63.7 | 2.1e-69 | 259.2 | |
| Cco08g1324 | . | 1 | 225 | MADS-box Gene Family | AT2G22540 | 56.5 | 3.8e-58 | 221.9 | |
| Cco10g0939 | . | 25 | 179 | MADS-box Gene Family | AT2G22540 | 59.0 | 3.4e-43 | 172.2 | |
| Cco04g1600 | . | 116 | 342 | MADS-box Gene Family | AT4G24540 | 57.5 | 4.8e-60 | 228.0 | |
| Cco08g1324 | . | 1 | 225 | MADS-box Gene Family | AT4G24540 | 56.8 | 2.2e-57 | 219.2 | |
| Cco10g0939 | . | 25 | 199 | MADS-box Gene Family | AT4G24540 | 53.4 | 6.3e-44 | 174.5 | |
| Cco07g1680 | . | 1 | 171 | MADS-box Gene Family | AT2G03710 | 66.9 | 1.1e-57 | 219.9 | |
| Cco08g1206 | . | 1 | 171 | MADS-box Gene Family | AT2G03710 | 65.1 | 7.2e-57 | 217.2 | |
| Cco06g0210 | . | 1 | 176 | MADS-box Gene Family | AT2G03710 | 63.8 | 2.6e-54 | 208.8 | |
| Cco01g1750 | . | 1 | 172 | MADS-box Gene Family | AT2G03710 | 63.6 | 3.7e-53 | 204.9 | |
| Cco06g0023 | . | 1 | 169 | MADS-box Gene Family | AT2G03710 | 54.7 | 6.0e-43 | 171.0 | |
| Cco07g1681 | . | 1 | 173 | MADS-box Gene Family | AT2G03710 | 51.7 | 4.0e-39 | 158.3 | |
| Cco07g1680 | . | 1 | 170 | MADS-box Gene Family | AT3G02310 | 86.5 | 6.7e-77 | 283.9 | |
| Cco06g0210 | . | 1 | 172 | MADS-box Gene Family | AT3G02310 | 77.9 | 1.3e-67 | 253.1 | |
| Cco01g1750 | . | 1 | 171 | MADS-box Gene Family | AT3G02310 | 67.3 | 6.3e-59 | 224.2 | |
| Cco08g1206 | . | 1 | 170 | MADS-box Gene Family | AT3G02310 | 66.7 | 1.9e-55 | 212.6 | |
| Cco06g0023 | . | 1 | 168 | MADS-box Gene Family | AT3G02310 | 61.4 | 2.3e-48 | 189.1 | |
| Cco08g1207 | . | 1 | 181 | MADS-box Gene Family | AT3G02310 | 53.6 | 7.8e-41 | 164.1 | |
| Cco07g1681 | . | 1 | 187 | MADS-box Gene Family | AT3G02310 | 51.3 | 1.0e-40 | 163.7 | |
| Cco05g0921 | . | 1 | 187 | MADS-box Gene Family | AT3G02310 | 51.0 | 4.3e-39 | 158.3 | |
| Cco01g0562 | . | 1 | 145 | MADS-box Gene Family | AT5G62165 | 68.3 | 3.9e-48 | 188.0 | |
| Cco05g0928 | . | 1 | 146 | MADS-box Gene Family | AT5G62165 | 64.4 | 4.7e-46 | 181.0 | |
| Cco06g0024 | . | 1 | 154 | MADS-box Gene Family | AT5G62165 | 55.2 | 1.6e-41 | 166.0 | |
| Cco05g0237 | . | 9 | 152 | MADS-box Gene Family | AT5G62165 | 62.5 | 2.0e-41 | 165.6 | |
| Cco01g0335 | . | 1 | 153 | MADS-box Gene Family | AT5G62165 | 55.6 | 6.0e-41 | 164.1 | |
| Cco10g0961 | . | 29 | 263 | MADS-box Gene Family | AT2G14210 | 53.8 | 1.7e-55 | 213.0 | |
| Cco04g1582 | . | 1 | 142 | MADS-box Gene Family | AT2G14210 | 66.4 | 9.4e-46 | 180.6 | |
| Cco03g0720 | . | 15 | 200 | MADS-box Gene Family | AT2G42830 | 72.9 | 5.8e-70 | 261.2 | |
| Cco08g0096 | . | 1 | 179 | MADS-box Gene Family | AT2G42830 | 72.9 | 1.3e-69 | 260.0 | |
| Cco04g2193 | . | 44 | 266 | MADS-box Gene Family | AT2G42830 | 61.9 | 1.6e-67 | 253.1 | |
| Cco02g1961 | . | 60 | 267 | MADS-box Gene Family | AT2G42830 | 62.0 | 4.6e-59 | 224.9 | |
| Cco06g0023 | . | 1 | 245 | MADS-box Gene Family | AT2G45650 | 64.7 | 1.4e-82 | 303.1 | |
| Cco07g1680 | . | 1 | 246 | MADS-box Gene Family | AT2G45650 | 50.4 | 2.0e-54 | 209.5 | |
| Cco05g0921 | . | 1 | 172 | MADS-box Gene Family | AT2G45650 | 58.6 | 2.2e-48 | 189.5 | |
| Cco08g1206 | . | 1 | 195 | MADS-box Gene Family | AT2G45650 | 51.2 | 2.9e-45 | 179.1 | |
| Cco07g1681 | . | 1 | 169 | MADS-box Gene Family | AT2G45650 | 53.3 | 4.9e-40 | 161.8 | |
| Cco08g0096 | . | 1 | 164 | MADS-box Gene Family | AT2G45650 | 53.0 | 4.9e-40 | 161.8 | |
| Cco08g1207 | . | 1 | 177 | MADS-box Gene Family | AT2G45650 | 52.0 | 2.7e-38 | 156.0 | |
| Cco04g2225 | . | 84 | 200 | MADS-box Gene Family | AT1G29960 | 54.7 | 1.7e-38 | 155.6 | |
| Cco01g1749 | . | 63 | 188 | MADS-box Gene Family | AT1G69120 | 67.7 | 1.7e-40 | 162.9 | |
| Cco08g1207 | . | 63 | 179 | MADS-box Gene Family | AT1G69120 | 70.1 | 2.3e-37 | 152.5 | |
| Cco05g0928 | . | 1 | 145 | MADS-box Gene Family | AT5G51870 | 57.2 | 4.4e-41 | 164.9 | |
| Cco01g0562 | . | 1 | 144 | MADS-box Gene Family | AT5G51870 | 56.6 | 3.5e-38 | 155.2 | |
| Cco01g1749 | . | 1 | 239 | MADS-box Gene Family | AT3G30260 | 52.0 | 3.4e-54 | 208.8 | |
| Cco07g1681 | . | 1 | 239 | MADS-box Gene Family | AT3G30260 | 51.8 | 3.0e-50 | 195.7 | |
| Cco08g1207 | . | 1 | 178 | MADS-box Gene Family | AT3G30260 | 58.4 | 2.0e-46 | 183.0 | |
| Cco01g1749 | . | 63 | 241 | MADS-box Gene Family | AT5G60910 | 56.1 | 1.5e-43 | 172.9 | |
| Cco06g0210 | . | 1 | 242 | MADS-box Gene Family | AT1G24260 | 72.9 | 7.7e-88 | 320.5 | |
| Cco07g1680 | . | 1 | 245 | MADS-box Gene Family | AT1G24260 | 59.8 | 5.5e-70 | 261.2 | |
| Cco01g1750 | . | 1 | 252 | MADS-box Gene Family | AT1G24260 | 50.6 | 2.3e-55 | 212.6 | |
| Cco08g1206 | . | 1 | 156 | MADS-box Gene Family | AT1G24260 | 66.9 | 4.9e-50 | 194.9 | |
| Cco01g1749 | . | 1 | 157 | MADS-box Gene Family | AT1G24260 | 54.3 | 7.8e-40 | 161.0 | |
| Cco08g1207 | . | 1 | 159 | MADS-box Gene Family | AT1G24260 | 53.8 | 7.8e-40 | 161.0 | |
| Cco05g0921 | . | 1 | 171 | MADS-box Gene Family | AT1G24260 | 51.1 | 2.8e-37 | 152.5 | |
| Cco05g2100 | . | 1 | 246 | MADS-box Gene Family | AT3G54340 | 56.1 | 2.1e-66 | 249.2 | |
| Cco11g1650 | . | 312 | 450 | MADS-box Gene Family | AT5G20240 | 71.9 | 2.3e-53 | 205.3 | |
| Cco11g1650 | . | 312 | 450 | MADS-box Gene Family | AT5G20240 | 71.9 | 2.3e-53 | 205.3 | |
| Cco05g2100 | . | 1 | 246 | MADS-box Gene Family | AT3G54340 | 56.1 | 2.1e-66 | 249.2 | |
| Cco03g0720 | . | 12 | 234 | MADS-box Gene Family | AT3G58780 | 65.5 | 2.1e-75 | 279.3 | |
| Cco04g2193 | . | 44 | 266 | MADS-box Gene Family | AT3G58780 | 63.1 | 4.4e-73 | 271.6 | |
| Cco08g0096 | . | 1 | 222 | MADS-box Gene Family | AT3G58780 | 60.9 | 4.9e-72 | 268.1 | |
| Cco02g1961 | . | 60 | 267 | MADS-box Gene Family | AT3G58780 | 63.2 | 9.8e-65 | 243.8 | |
| Cco07g1680 | . | 1 | 246 | MADS-box Gene Family | AT5G15800 | 73.4 | 8.2e-99 | 357.1 | |
| Cco06g0210 | . | 1 | 241 | MADS-box Gene Family | AT5G15800 | 59.8 | 1.2e-73 | 273.5 | |
| Cco01g1750 | . | 1 | 253 | MADS-box Gene Family | AT5G15800 | 53.8 | 5.0e-64 | 241.5 | |
| Cco08g1206 | . | 1 | 173 | MADS-box Gene Family | AT5G15800 | 69.5 | 1.8e-58 | 223.0 | |
| Cco01g1749 | . | 1 | 174 | MADS-box Gene Family | AT5G15800 | 53.4 | 2.4e-42 | 169.5 | |
| Cco07g1681 | . | 1 | 175 | MADS-box Gene Family | AT5G15800 | 54.3 | 9.2e-42 | 167.5 | |
| Cco08g1207 | . | 1 | 176 | MADS-box Gene Family | AT5G15800 | 54.5 | 1.2e-41 | 167.2 | |
| Cco05g0921 | . | 1 | 171 | MADS-box Gene Family | AT5G15800 | 54.0 | 6.6e-40 | 161.4 | |
| Cco07g1680 | . | 1 | 171 | MADS-box Gene Family | AT2G03710 | 66.9 | 1.1e-57 | 219.9 | |
| Cco08g1206 | . | 1 | 171 | MADS-box Gene Family | AT2G03710 | 65.1 | 7.2e-57 | 217.2 | |
| Cco06g0210 | . | 1 | 176 | MADS-box Gene Family | AT2G03710 | 63.8 | 2.6e-54 | 208.8 | |
| Cco01g1750 | . | 1 | 172 | MADS-box Gene Family | AT2G03710 | 63.6 | 3.7e-53 | 204.9 | |
| Cco06g0023 | . | 1 | 169 | MADS-box Gene Family | AT2G03710 | 54.7 | 6.0e-43 | 171.0 | |
| Cco07g1681 | . | 1 | 173 | MADS-box Gene Family | AT2G03710 | 51.7 | 4.0e-39 | 158.3 | |
| Cco07g1680 | . | 1 | 170 | MADS-box Gene Family | AT3G02310 | 86.5 | 6.7e-77 | 283.9 | |
| Cco06g0210 | . | 1 | 172 | MADS-box Gene Family | AT3G02310 | 77.9 | 1.3e-67 | 253.1 | |
| Cco01g1750 | . | 1 | 171 | MADS-box Gene Family | AT3G02310 | 67.3 | 6.3e-59 | 224.2 | |
| Cco08g1206 | . | 1 | 170 | MADS-box Gene Family | AT3G02310 | 66.7 | 1.9e-55 | 212.6 | |
| Cco06g0023 | . | 1 | 168 | MADS-box Gene Family | AT3G02310 | 61.4 | 2.3e-48 | 189.1 | |
| Cco08g1207 | . | 1 | 181 | MADS-box Gene Family | AT3G02310 | 53.6 | 7.8e-41 | 164.1 | |
| Cco07g1681 | . | 1 | 187 | MADS-box Gene Family | AT3G02310 | 51.3 | 1.0e-40 | 163.7 | |
| Cco05g0921 | . | 1 | 187 | MADS-box Gene Family | AT3G02310 | 51.0 | 4.3e-39 | 158.3 | |
| Cco03g0720 | . | 15 | 200 | MADS-box Gene Family | AT2G42830 | 72.9 | 5.8e-70 | 261.2 | |
| Cco08g0096 | . | 1 | 179 | MADS-box Gene Family | AT2G42830 | 72.9 | 1.3e-69 | 260.0 | |
| Cco04g2193 | . | 44 | 266 | MADS-box Gene Family | AT2G42830 | 61.9 | 1.6e-67 | 253.1 | |
| Cco02g1961 | . | 60 | 267 | MADS-box Gene Family | AT2G42830 | 62.0 | 4.6e-59 | 224.9 | |
| Cco06g0023 | . | 1 | 245 | MADS-box Gene Family | AT2G45650 | 64.7 | 1.4e-82 | 303.1 | |
| Cco07g1680 | . | 1 | 246 | MADS-box Gene Family | AT2G45650 | 50.4 | 2.0e-54 | 209.5 | |
| Cco05g0921 | . | 1 | 172 | MADS-box Gene Family | AT2G45650 | 58.6 | 2.2e-48 | 189.5 | |
| Cco08g1206 | . | 1 | 195 | MADS-box Gene Family | AT2G45650 | 51.2 | 2.9e-45 | 179.1 | |
| Cco07g1681 | . | 1 | 169 | MADS-box Gene Family | AT2G45650 | 53.3 | 4.9e-40 | 161.8 | |
| Cco08g0096 | . | 1 | 164 | MADS-box Gene Family | AT2G45650 | 53.0 | 4.9e-40 | 161.8 | |
| Cco08g1207 | . | 1 | 177 | MADS-box Gene Family | AT2G45650 | 52.0 | 2.7e-38 | 156.0 | |
| Cco01g1749 | . | 63 | 188 | MADS-box Gene Family | AT1G69120 | 67.7 | 1.7e-40 | 162.9 | |
| Cco08g1207 | . | 63 | 179 | MADS-box Gene Family | AT1G69120 | 70.1 | 2.3e-37 | 152.5 | |
| Cco01g1749 | . | 63 | 241 | MADS-box Gene Family | AT5G60910 | 56.1 | 1.5e-43 | 172.9 | |
| Cco06g0210 | . | 1 | 242 | MADS-box Gene Family | AT1G24260 | 72.9 | 7.7e-88 | 320.5 | |
| Cco07g1680 | . | 1 | 245 | MADS-box Gene Family | AT1G24260 | 59.8 | 5.5e-70 | 261.2 | |
| Cco01g1750 | . | 1 | 252 | MADS-box Gene Family | AT1G24260 | 50.6 | 2.3e-55 | 212.6 | |
| Cco08g1206 | . | 1 | 156 | MADS-box Gene Family | AT1G24260 | 66.9 | 4.9e-50 | 194.9 | |
| Cco01g1749 | . | 1 | 157 | MADS-box Gene Family | AT1G24260 | 54.3 | 7.8e-40 | 161.0 | |
| Cco08g1207 | . | 1 | 159 | MADS-box Gene Family | AT1G24260 | 53.8 | 7.8e-40 | 161.0 | |
| Cco05g0921 | . | 1 | 171 | MADS-box Gene Family | AT1G24260 | 51.1 | 2.8e-37 | 152.5 | |
| Cco01g1749 | . | 1 | 245 | MADS-box Gene Family | AT1G26310 | 56.1 | 1.9e-68 | 256.1 | |
| Cco08g1207 | . | 1 | 178 | MADS-box Gene Family | AT1G26310 | 71.3 | 8.9e-66 | 247.3 | |
| Cco07g1681 | . | 1 | 235 | MADS-box Gene Family | AT1G26310 | 55.5 | 7.0e-63 | 237.7 | |
| Cco08g1206 | . | 1 | 180 | MADS-box Gene Family | AT1G26310 | 54.6 | 1.1e-44 | 177.2 | |
| Cco07g1680 | . | 1 | 173 | MADS-box Gene Family | AT1G26310 | 54.5 | 4.0e-42 | 168.7 | |
| Cco06g0023 | . | 1 | 158 | MADS-box Gene Family | AT1G26310 | 59.2 | 5.3e-42 | 168.3 | |
| Cco01g1750 | . | 1 | 174 | MADS-box Gene Family | AT1G26310 | 54.2 | 7.6e-41 | 164.5 | |
| Cco08g0096 | . | 1 | 223 | MADS-box Gene Family | AT4G09960 | 75.2 | 8.9e-89 | 323.6 | |
| Cco03g0720 | . | 20 | 197 | MADS-box Gene Family | AT4G09960 | 74.7 | 9.5e-67 | 250.4 | |
| Cco04g2193 | . | 46 | 221 | MADS-box Gene Family | AT4G09960 | 74.4 | 9.5e-67 | 250.4 | |
| Cco02g1961 | . | 60 | 216 | MADS-box Gene Family | AT4G09960 | 66.2 | 4.3e-51 | 198.4 | |
| Cco08g0104 | . | 1 | 201 | MADS-box Gene Family | AT1G71692 | 57.6 | 2.5e-58 | 222.2 | |
| Cco06g0023 | . | 1 | 241 | MADS-box Gene Family | AT3G61120 | 56.1 | 6.7e-63 | 237.7 | |
| Cco07g1680 | . | 1 | 173 | MADS-box Gene Family | AT3G61120 | 53.8 | 1.1e-41 | 167.2 | |
| Cco06g0210 | . | 1 | 170 | MADS-box Gene Family | AT3G61120 | 55.8 | 1.9e-41 | 166.4 | |
| Cco01g1749 | . | 1 | 168 | MADS-box Gene Family | AT3G61120 | 51.5 | 3.7e-37 | 152.1 | |
| Cco08g1206 | . | 1 | 173 | MADS-box Gene Family | AT3G61120 | 50.9 | 3.7e-37 | 152.1 | |
| Cco01g0335 | . | 1 | 208 | MADS-box Gene Family | AT4G11880 | 59.2 | 3.8e-57 | 218.4 | |
| Cco05g0237 | . | 9 | 222 | MADS-box Gene Family | AT4G11880 | 53.4 | 1.3e-49 | 193.4 | |
| Cco06g0024 | . | 1 | 218 | MADS-box Gene Family | AT4G11880 | 53.4 | 1.1e-48 | 190.3 | |
| Cco05g0928 | . | 1 | 189 | MADS-box Gene Family | AT4G11880 | 56.5 | 2.7e-42 | 169.1 | |
| Cco01g0562 | . | 1 | 210 | MADS-box Gene Family | AT4G11880 | 51.8 | 7.8e-42 | 167.5 | |
| Cco10g1206 | . | 1 | 249 | MADS-box Gene Family | AT5G13790 | 54.4 | 1.0e-56 | 217.2 | |
| Cco10g0961 | . | 29 | 255 | MADS-box Gene Family | AT2G22630 | 52.0 | 2.2e-55 | 212.6 | |
| Cco04g1582 | . | 1 | 160 | MADS-box Gene Family | AT2G22630 | 67.5 | 1.2e-53 | 206.8 | |
| Cco01g0335 | . | 1 | 210 | MADS-box Gene Family | AT4G22950 | 60.6 | 2.8e-60 | 228.8 | |
| Cco05g0237 | . | 9 | 224 | MADS-box Gene Family | AT4G22950 | 53.3 | 3.7e-52 | 201.8 | |
| Cco06g0024 | . | 1 | 218 | MADS-box Gene Family | AT4G22950 | 54.3 | 3.7e-52 | 201.8 | |
| Cco05g0928 | . | 1 | 189 | MADS-box Gene Family | AT4G22950 | 55.8 | 1.1e-43 | 173.7 | |
| Cco01g0562 | . | 1 | 210 | MADS-box Gene Family | AT4G22950 | 51.6 | 2.6e-42 | 169.1 | |
| Cco08g0096 | . | 1 | 164 | MADS-box Gene Family | AT4G22950 | 51.8 | 2.6e-37 | 152.5 | |
| Cco06g0024 | . | 1 | 162 | MADS-box Gene Family | AT2G45660 | 71.0 | 8.3e-54 | 206.8 | |
| Cco05g0237 | . | 9 | 168 | MADS-box Gene Family | AT2G45660 | 68.1 | 1.7e-51 | 199.1 | |
| Cco01g0335 | . | 1 | 158 | MADS-box Gene Family | AT2G45660 | 65.8 | 9.5e-50 | 193.4 | |
| Cco01g0562 | . | 1 | 158 | MADS-box Gene Family | AT2G45660 | 65.8 | 2.4e-45 | 178.7 | |
| Cco05g0928 | . | 1 | 157 | MADS-box Gene Family | AT2G45660 | 60.5 | 5.0e-43 | 171.0 | |
| Cco10g0961 | . | 29 | 256 | MADS-box Gene Family | AT4G37940 | 51.8 | 2.7e-55 | 212.2 | |
| Cco04g1582 | . | 1 | 155 | MADS-box Gene Family | AT4G37940 | 67.1 | 2.1e-52 | 202.6 | |
| Cco04g1600 | . | 116 | 338 | MADS-box Gene Family | AT2G22540 | 63.7 | 2.1e-69 | 259.2 | |
| Cco08g1324 | . | 1 | 225 | MADS-box Gene Family | AT2G22540 | 56.5 | 3.8e-58 | 221.9 | |
| Cco10g0939 | . | 25 | 179 | MADS-box Gene Family | AT2G22540 | 59.0 | 3.4e-43 | 172.2 | |
| Cco04g1600 | . | 116 | 342 | MADS-box Gene Family | AT4G24540 | 57.5 | 4.8e-60 | 228.0 | |
| Cco08g1324 | . | 1 | 225 | MADS-box Gene Family | AT4G24540 | 56.8 | 2.2e-57 | 219.2 | |
| Cco10g0939 | . | 25 | 199 | MADS-box Gene Family | AT4G24540 | 53.4 | 6.3e-44 | 174.5 | |
| Cco01g0562 | . | 1 | 145 | MADS-box Gene Family | AT5G62165 | 68.3 | 3.9e-48 | 188.0 | |
| Cco05g0928 | . | 1 | 146 | MADS-box Gene Family | AT5G62165 | 64.4 | 4.7e-46 | 181.0 | |
| Cco06g0024 | . | 1 | 154 | MADS-box Gene Family | AT5G62165 | 55.2 | 1.6e-41 | 166.0 | |
| Cco05g0237 | . | 9 | 152 | MADS-box Gene Family | AT5G62165 | 62.5 | 2.0e-41 | 165.6 | |
| Cco01g0335 | . | 1 | 153 | MADS-box Gene Family | AT5G62165 | 55.6 | 6.0e-41 | 164.1 | |
| Cco10g0961 | . | 29 | 263 | MADS-box Gene Family | AT2G14210 | 53.8 | 1.7e-55 | 213.0 | |
| Cco04g1582 | . | 1 | 142 | MADS-box Gene Family | AT2G14210 | 66.4 | 9.4e-46 | 180.6 | |
| Cco04g2225 | . | 84 | 200 | MADS-box Gene Family | AT1G29960 | 54.7 | 1.7e-38 | 155.6 | |
| Cco05g0928 | . | 1 | 145 | MADS-box Gene Family | AT5G51870 | 57.2 | 4.4e-41 | 164.9 | |
| Cco01g0562 | . | 1 | 144 | MADS-box Gene Family | AT5G51870 | 56.6 | 3.5e-38 | 155.2 | |
| Cco01g1749 | . | 1 | 239 | MADS-box Gene Family | AT3G30260 | 52.0 | 3.4e-54 | 208.8 | |
| Cco07g1681 | . | 1 | 239 | MADS-box Gene Family | AT3G30260 | 51.8 | 3.0e-50 | 195.7 | |
| Cco08g1207 | . | 1 | 178 | MADS-box Gene Family | AT3G30260 | 58.4 | 2.0e-46 | 183.0 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0002056 | 0 | 2 | 0 | 0 | 1 | 2 | 3 | 2 | 1 | 2 | 2 | 2 | 2 | 2 | 2 | 3 | 1 | 3 | 3 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 7 | 6 | 1 | 63 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 59207 | PF01486 | K-box | 1.30E-25 | No_clan | Cco | TF |