Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0244 ATGGAACTTCTGTCACGCCCCATTTCAGTTGCAGTTGTATTGCTTCTGATTTCCATTGTTGTAAGGCAGATTCTAGCTGGAAAGCTGAGGAAGAAGAAGTATCATCCAATTGCAGGCACTGTATTTCACCAGCTCCTCAATTTCCACCGGTTGCAAGATTACATGACTGATCTTGCTCGAAAGCATAAAACATACAGGCTTCTTGGGCCCTTCAGGAATGAGGTTTATACTTCTGACCCACCAAATGTTGAGTATATACTCAGAACCAACTTCGAGAATTTTGGCAAGGGGTCACATAACTACAGAATTCTCAGGGATCTTCTTGGCGATGGAATTTTCACAGTTGATGGAGAGAAGTGGCGTCAGCAGAGAAAGATTTCAAGCTATGAGTTCTCTACAAAAGTTCTGAGGGACTACAGCAGTGTCATCTTCCGGAAAACTGCTGTCAAACTAGCTAACATCGTGTCTGAAGCTGCTATTTCGAATCGAGTAATTGATATTCAAGATCTGTTTATGAAAACAACTATGGATTCAATATTTCATGTTTCATTTGGAATTGATCTAGATAGCTTGCATGGATCAAATGAAGAAATGAACAAGTTTTGCTCTGCTTTTGAAGCATCAAGTACAATGACACTCTGGCGATACGTTGATGTAATCTGGCCAATCAAGAAGGCTCTGAACATTGGGTCCGAAGCTATCTTAAAAGAGAACATGAAAATTGTTGATGAATACATATATAAGCTCATTAGTAGCGCACTCGAACAGAGAGAAAAGTTAGGCGTCAACGCTTTGATGAAAAGAGAGAATATAGTGTCGAGGTTTCTGCAAGCGGAAACGTCCGATCCAAAGTATCTAAGAGATATTATTCTTAATTTTGTAATAGCTGGAAAAGACACAACGGCAGTTACCCTTGCTTGGTTCATTTACATGCTTTGCAAGCATCCTGCAGTGCAGGAAAGAGTTGCTAGAGAGATCAAGGAAGTGACAAACGTTGAAGATGTTACCAATTTTGCGGAGTTTGCTGCAAGATTGACTGAACAATCTCTAGAGAAGATGCAGTTTCTTACTGCAGCTATCAATGAAACGCTTAGACTCTATCCTGCTGTTCCAGTGGATGCAAAGATTTGCTTTTCCGACGATACACTTCCGGATGGATTCAGTGTGAGGAAAGGAGATATGGTGTCGTACCAGCCATATGCAATGGGTAGGATGAAATTCATATGGGGTGATGATGCCGAGGAATTCCGACCAGAGAGATGGCTTGATGGAGATGGAAATCTCCAGCCTCAGAGCCCTTTCAAATTTACAGCCTTTCAGGCAGGGCCACGAATTTGTCTGGGAAAAGAGTTTGCTTACAGGCAGATAAAAATCATCTCAGCTCTATTATTGAGCTGTTTTAAGTTCAAAATGAGTGATGAGAACAAAATTGTGCAGTATCAACCAATGATCAATCTTCTCATAAAAGGAGGCCTTCAAGTTTGTGCCATTCCTAGACGTCCTATGCCCTAA 1512 41.2 MELLSRPISVAVVLLLISIVVRQILAGKLRKKKYHPIAGTVFHQLLNFHRLQDYMTDLARKHKTYRLLGPFRNEVYTSDPPNVEYILRTNFENFGKGSHNYRILRDLLGDGIFTVDGEKWRQQRKISSYEFSTKVLRDYSSVIFRKTAVKLANIVSEAAISNRVIDIQDLFMKTTMDSIFHVSFGIDLDSLHGSNEEMNKFCSAFEASSTMTLWRYVDVIWPIKKALNIGSEAILKENMKIVDEYIYKLISSALEQREKLGVNALMKRENIVSRFLQAETSDPKYLRDIILNFVIAGKDTTAVTLAWFIYMLCKHPAVQERVAREIKEVTNVEDVTNFAEFAARLTEQSLEKMQFLTAAINETLRLYPAVPVDAKICFSDDTLPDGFSVRKGDMVSYQPYAMGRMKFIWGDDAEEFRPERWLDGDGNLQPQSPFKFTAFQAGPRICLGKEFAYRQIKIISALLLSCFKFKMSDENKIVQYQPMINLLIKGGLQVCAIPRRPMP 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1908927 1912025 + CcPI632755_05g002440.1 Cco05g0244 177872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0244 503 Pfam Cytochrome P450 35 486 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 PRINTS E-class P450 group I signature 446 469 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 PRINTS E-class P450 group I signature 436 446 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 PRINTS P450 superfamily signature 446 457 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 PRINTS P450 superfamily signature 437 446 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 SUPERFAMILY Cytochrome P450 33 499 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0244 503 PANTHER CYTOCHROME P450 19 492 - -
Cco05g0244 503 CDD CYP86A 63 492 - -
Cco05g0244 503 Gene3D Cytochrome P450 28 500 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0244 Cco-Chr5:1908927 Cco11g0907 Cco-Chr11:12415077 7.00E-107 dispersed
Cco05g0244 Cco-Chr5:1908927 Cco05g0248 Cco-Chr5:1963939 2.40E-139 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0244 - - - 0.0