Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g0248 | ATGGAACTGATTATCAATATCTTCACCCTCATTTTCATCGTTCTCTCCCTCTTCTGTCTCTCCTTCTTCATTCTCCTCCTCCGAACGCTCGCCGGAAAGTCCATAACCAACTCCGACTACCCGCCGGTGTACGGCACCATTTACGGCCAGGCTTTCTACTTCAACAACCTGTACGACCATCTGACGGCGGTGGCGAAACGGCATAGAACCTTCCGACTGATCGGGACGGCGTACAGCGAGATATACACGGTCGATCCGAGAAACATCGAACAGATATTGAAGACGAAATTCGACAAGTACTCGAAAGGAAGGAAAGATGAAGAAGTGTGTGGGGATTTGTTCGGAGAGGGAATTTTTTTGGTGGATGGAGAAAAGTGGAAGCAGCAGAGGAAATTGGCGAGCTATGAATTCTCGACGAAGATTGTTAGGGATTTTAGTTGCTCTGTTTTCAGAAAAAATGCGGGTAAACTTGTTGGAATTCTTTGGGAGTTCTCCGCCATGGCTCGGGTCTTCGATGTCCAGGATTTGCTAATGCGATGCTCTTTGGACTCCATTTTCAAAGTTGGGTTCGGCGTCGAATTGAATTGCTTGGAGGAACCAAGCAAAGCAGGGAGCGGGTTCATGAAGGCCTTTGATGATTCTAGCGCTCAGGTTTTTTGGCGCTACATCGATCCTTTCTGGAAATTTAAAAGATTTCTCAACATTGGTTCCGAAGCTTCGTTTAGGAACAACCTCAAGGTAATCGATGCTTTTGTGCACCGGTTGATCAGTGCCAGGAGAAAATTGCTTCACCAACCAAATCTCAAGAATGACAAAGAGGACATACTTTCGAGGTTTCTGATGGAAAGTGAGAAGGATCCGACAAGAATGAATGATCAATATCTGAGAGATATAGTCCTGAATTTCATGTTGGCTGGCAGGGATTCAACTGCAGGAACTCTGTCTTGGTTCTTCTATATGCTATGCAAGAACCCTTTAATACAGGAAAAAGTTGCAGAAGAAGTGAGCCAAATTGTTGGGGTTCAAGGGGAAGAAGCTGATATAAATTTGTTCATACAAAACTTAACTGATTCAGCTCTTGATAAAATGCATTATCTCCATGCAGCATTGACAGAGACTCTAAGGCTCTACCCTGCTGTCCCTGTGGATGGAAGGACTGCAGAAATTGATGACATTCTTCCTGATGGCTATAAACTAAGAAAAGGGGATGGAGTATACTACTTGGCCTATTCCATGGGCAGGATGCCCTGCCTTTGGGGAGAAGATGCTGAAGACTTTAAACCAGAGAGATGGCTTGAAAATGGAACTTTTCGACCCGAATCGCCTTTCAAGTTCATCGCATTTCATGCGGGTCCTCGAACGTGTTTGGGAAAGGATTTTGCTTATCGACAAATGAAGATAGTATCTGCTACACTGCTTCATTTTTTTCGATTCAAATTAGCCGATCCAACGAGAAATATAACTTATAGGATCATGCTTACCCTTCACATCGATGGAGGTCTCCCACTTCTAGCAATCCCAAGAGCAAGAAAATTTGCCTAA | 1542 | 44.29 | MELIINIFTLIFIVLSLFCLSFFILLLRTLAGKSITNSDYPPVYGTIYGQAFYFNNLYDHLTAVAKRHRTFRLIGTAYSEIYTVDPRNIEQILKTKFDKYSKGRKDEEVCGDLFGEGIFLVDGEKWKQQRKLASYEFSTKIVRDFSCSVFRKNAGKLVGILWEFSAMARVFDVQDLLMRCSLDSIFKVGFGVELNCLEEPSKAGSGFMKAFDDSSAQVFWRYIDPFWKFKRFLNIGSEASFRNNLKVIDAFVHRLISARRKLLHQPNLKNDKEDILSRFLMESEKDPTRMNDQYLRDIVLNFMLAGRDSTAGTLSWFFYMLCKNPLIQEKVAEEVSQIVGVQGEEADINLFIQNLTDSALDKMHYLHAALTETLRLYPAVPVDGRTAEIDDILPDGYKLRKGDGVYYLAYSMGRMPCLWGEDAEDFKPERWLENGTFRPESPFKFIAFHAGPRTCLGKDFAYRQMKIVSATLLHFFRFKLADPTRNITYRIMLTLHIDGGLPLLAIPRARKFA | 513 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1963939 | 1969442 | + | CcPI632755_05g002480.1 | Cco05g0248 | 177876 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g0248 | 513 | CDD | CYP86A | 69 | 501 | - | - | |
| Cco05g0248 | 513 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 448 | 457 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco05g0248 | 513 | PRINTS | E-class P450 group I signature | 314 | 340 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | PRINTS | E-class P450 group I signature | 367 | 385 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | PRINTS | E-class P450 group I signature | 455 | 478 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | PRINTS | E-class P450 group I signature | 294 | 311 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | PRINTS | E-class P450 group I signature | 445 | 455 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | SUPERFAMILY | Cytochrome P450 | 42 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | PANTHER | CYTOCHROME P450 | 22 | 501 | - | - | |
| Cco05g0248 | 513 | Gene3D | Cytochrome P450 | 42 | 506 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | Pfam | Cytochrome P450 | 54 | 484 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | PRINTS | P450 superfamily signature | 305 | 322 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | PRINTS | P450 superfamily signature | 368 | 379 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | PRINTS | P450 superfamily signature | 446 | 455 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0248 | 513 | PRINTS | P450 superfamily signature | 455 | 466 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g0248 | Cco-Chr5:1963939 | Cco11g0907 | Cco-Chr11:12415077 | 1.50E-104 | dispersed | |
| Cco05g0244 | Cco-Chr5:1908927 | Cco05g0248 | Cco-Chr5:1963939 | 2.40E-139 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g0248 | - | - | - | 0.0 |