Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0248 ATGGAACTGATTATCAATATCTTCACCCTCATTTTCATCGTTCTCTCCCTCTTCTGTCTCTCCTTCTTCATTCTCCTCCTCCGAACGCTCGCCGGAAAGTCCATAACCAACTCCGACTACCCGCCGGTGTACGGCACCATTTACGGCCAGGCTTTCTACTTCAACAACCTGTACGACCATCTGACGGCGGTGGCGAAACGGCATAGAACCTTCCGACTGATCGGGACGGCGTACAGCGAGATATACACGGTCGATCCGAGAAACATCGAACAGATATTGAAGACGAAATTCGACAAGTACTCGAAAGGAAGGAAAGATGAAGAAGTGTGTGGGGATTTGTTCGGAGAGGGAATTTTTTTGGTGGATGGAGAAAAGTGGAAGCAGCAGAGGAAATTGGCGAGCTATGAATTCTCGACGAAGATTGTTAGGGATTTTAGTTGCTCTGTTTTCAGAAAAAATGCGGGTAAACTTGTTGGAATTCTTTGGGAGTTCTCCGCCATGGCTCGGGTCTTCGATGTCCAGGATTTGCTAATGCGATGCTCTTTGGACTCCATTTTCAAAGTTGGGTTCGGCGTCGAATTGAATTGCTTGGAGGAACCAAGCAAAGCAGGGAGCGGGTTCATGAAGGCCTTTGATGATTCTAGCGCTCAGGTTTTTTGGCGCTACATCGATCCTTTCTGGAAATTTAAAAGATTTCTCAACATTGGTTCCGAAGCTTCGTTTAGGAACAACCTCAAGGTAATCGATGCTTTTGTGCACCGGTTGATCAGTGCCAGGAGAAAATTGCTTCACCAACCAAATCTCAAGAATGACAAAGAGGACATACTTTCGAGGTTTCTGATGGAAAGTGAGAAGGATCCGACAAGAATGAATGATCAATATCTGAGAGATATAGTCCTGAATTTCATGTTGGCTGGCAGGGATTCAACTGCAGGAACTCTGTCTTGGTTCTTCTATATGCTATGCAAGAACCCTTTAATACAGGAAAAAGTTGCAGAAGAAGTGAGCCAAATTGTTGGGGTTCAAGGGGAAGAAGCTGATATAAATTTGTTCATACAAAACTTAACTGATTCAGCTCTTGATAAAATGCATTATCTCCATGCAGCATTGACAGAGACTCTAAGGCTCTACCCTGCTGTCCCTGTGGATGGAAGGACTGCAGAAATTGATGACATTCTTCCTGATGGCTATAAACTAAGAAAAGGGGATGGAGTATACTACTTGGCCTATTCCATGGGCAGGATGCCCTGCCTTTGGGGAGAAGATGCTGAAGACTTTAAACCAGAGAGATGGCTTGAAAATGGAACTTTTCGACCCGAATCGCCTTTCAAGTTCATCGCATTTCATGCGGGTCCTCGAACGTGTTTGGGAAAGGATTTTGCTTATCGACAAATGAAGATAGTATCTGCTACACTGCTTCATTTTTTTCGATTCAAATTAGCCGATCCAACGAGAAATATAACTTATAGGATCATGCTTACCCTTCACATCGATGGAGGTCTCCCACTTCTAGCAATCCCAAGAGCAAGAAAATTTGCCTAA 1542 44.29 MELIINIFTLIFIVLSLFCLSFFILLLRTLAGKSITNSDYPPVYGTIYGQAFYFNNLYDHLTAVAKRHRTFRLIGTAYSEIYTVDPRNIEQILKTKFDKYSKGRKDEEVCGDLFGEGIFLVDGEKWKQQRKLASYEFSTKIVRDFSCSVFRKNAGKLVGILWEFSAMARVFDVQDLLMRCSLDSIFKVGFGVELNCLEEPSKAGSGFMKAFDDSSAQVFWRYIDPFWKFKRFLNIGSEASFRNNLKVIDAFVHRLISARRKLLHQPNLKNDKEDILSRFLMESEKDPTRMNDQYLRDIVLNFMLAGRDSTAGTLSWFFYMLCKNPLIQEKVAEEVSQIVGVQGEEADINLFIQNLTDSALDKMHYLHAALTETLRLYPAVPVDGRTAEIDDILPDGYKLRKGDGVYYLAYSMGRMPCLWGEDAEDFKPERWLENGTFRPESPFKFIAFHAGPRTCLGKDFAYRQMKIVSATLLHFFRFKLADPTRNITYRIMLTLHIDGGLPLLAIPRARKFA 513
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 1963939 1969442 + CcPI632755_05g002480.1 Cco05g0248 177876
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0248 513 CDD CYP86A 69 501 - -
Cco05g0248 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco05g0248 513 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 SUPERFAMILY Cytochrome P450 42 508 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 PANTHER CYTOCHROME P450 22 501 - -
Cco05g0248 513 Gene3D Cytochrome P450 42 506 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 Pfam Cytochrome P450 54 484 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g0248 513 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0248 Cco-Chr5:1963939 Cco11g0907 Cco-Chr11:12415077 1.50E-104 dispersed
Cco05g0244 Cco-Chr5:1908927 Cco05g0248 Cco-Chr5:1963939 2.40E-139 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0248 - - - 0.0