Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0251 | ATGGAGAGCAATCCCGCCGCCTCCGCCGTCGTCGTTAGCAATACCCCAAGCATCCCGCCGGAGAAACGTAACCGTTCCATCTTCGACGTCCCGGCCGACTTCTTTGATTCCTGCAAACTCCTTCGTTCTCCACACTCATACACCTCATCAACCAGCGGCAGCAACAGGGACAGCTCAAGCGCAGAAAGCACAGTCGATTCGGAGCAGAACTATAGGGATTTGAAAGAAAGTCCCGTCGCCCACCGATGGACCTGCAACACATGCAAGGCCGAGTTCGAGTCCCTGCTTGACCAGCGTTCGCACTTCAAATCCGACCTTCACCGGTTCAATGTGAAACTAAGCATTGCTGGAAAGAATATTGTGAAGGAGGATGATTTTGATGAGCTGACATCTGATTCTTTCAGAGACTTTGATGTGTCAAGTATTTCTGGATCAGAGGACGAAACAGAGAAGGAGGTTAATTTTCGGAATGAAGGGCCTAAGGGAACAAGTGATACTGCGAACAAGAAGAGGTTGTTTGTTCATCTTCAAACTGGTGAAAGAGCTTCGGTCTGGAAGTGTTTGCTCATAAATGAGTCAGATAATATTTCATACGAAGATGATAAAACATCAATCAGTGGTAATGGCGTTCATGCCCAGTACCTTAGAGAGAATGAAATCATAGCAAGATTAAAATATTTAAATCATGAGCCAAGAGATGGCTCCCATTTGCGGATAGTGTTGCTTGCAAGTGGTGGGCACTTTGCGGGTTGTGTCTTCGATGGAAACATAGTTGTAGCTCATAAAACCTTTCACAGATATGTGGTGAGAGCCAAGTCTGGAAAGAAACAGTCATCAAAAGATGCAAGTGGCAAATCAATCAGTTCTGCTGGGGCTTCACTTCGTCGTCATAATGAACTGGCATTGAAGAAGGAAATTCAAGATCTCCTTGCTGCTTGGAAGTCCTACTTTAATGCTTCATCTTGCGTTTATATTTATGCTCCTTCAAACAATCGGCAATTGCTTTTTAATGGAGACAAGCCTTACTTTAGTGATCAGCATGCTGCTGTTCGGAATATTCCTTTGACTGTTCGAAGGCCTACATTGAAAGAAGCTCGGCGTGTTTATGAACAATTGGTGCAAATAGTGTATGAAGTAGATGAGAATGAAATATTGTCCACCACTGAGCACGATTCACTGTTAAGCGCAGTTACAATGGACAATGGCACCCGAGGTATAAGTGGACAGGAAGTAATTGGAGATTTGGAGAAGGATGCTTGTACACATCTTGAAGAATCTGTTGAACACCCCAAAACTAGTGAGAGTGAAAGTGAAGTTATTTGTAGAACTACACCTTTACATGAAGCATCACAGTCTGGAAATGCAGATAAGGTTTTGGAACTCCTTGAACAGGGTCTTGATCCTTGCATCAAAGATGAAAGAGGACGTACTCCTTATATGCTAGCAAGTGAGAAGGAAGTCCGAAATAACTTTAGAAGGTTCATGGCTTCAAACCTTGATAAGTGGGATTGGAATGCTGCTAAGGTGCCGAGCGCATTAACCAAGGAAATGGAGGAATCTCAAGCAGCTAAGCAGGCTGAAAAAGATGCCAAGCGAAAGGCTAGAGCAAAGGAGTTGAAAAAATTAAAGAAAGAAAAGGCCAAGAAAGCACAGGCCCTGGATGCTGAATCCCAAAAGGCTGTGAAGCCGGAACAGAGTAGAGGAATCGGCTCTTCTATTTTGAATTCTTGGGCTGAATCAACCAGTGGGAAACTGATTGCCAAAGAGATGGCACAGGCTGCTGAACGGGAAAAGAGAGCAGCAGCTGCTGAGAGAAGAATGGCAGCCATGGTCGCAGCTGCAGCTACCAACAATTCCTCGTTGACTACTCCTAGCAGCTCGCAGACTAAAAGTGGGTTGGCGGGGGATGTCAACTGCTCCTGCTGCGGTACTTCGCTGGCCGAACCGCAAGTTCGCAGAGCAGCTCTGAAAATGTCTGTTACTTTGCACACAAATCTCGGAGACATCAAGTGCGAGATTTTTTGCGATGAAGTCCCCAAGTCTGCCGAGAACTTTTTGGCACTGTGTGCAAGTGGTTACTATGATGGAACCATATTCCATCGCAATATCAAAGGTTTTATGATACAAGGTGGAGACCCAACTGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAGAAGTTTAATGACGAGATAAAAGAGTCACTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGCGCAAATACGAATGGAAGCCAATTTTTTATAACTTATGCAAAGCAGCCACATTTAAATGGATTATATACTGTTTTCGGTAGAGTGATTCATGGGTTCGAAGTACTTGATATCATGGAAAAGACACAAACTGGACCGGGTGATCGTCCTCTCGCAGAGATCAGGCTCAATCGAGTGACGATACACGCTAATCCTCTTGCAGGCTAA | 2454 | 44.91 | MESNPAASAVVVSNTPSIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSSTSGSNRDSSSAESTVDSEQNYRDLKESPVAHRWTCNTCKAEFESLLDQRSHFKSDLHRFNVKLSIAGKNIVKEDDFDELTSDSFRDFDVSSISGSEDETEKEVNFRNEGPKGTSDTANKKRLFVHLQTGERASVWKCLLINESDNISYEDDKTSISGNGVHAQYLRENEIIARLKYLNHEPRDGSHLRIVLLASGGHFAGCVFDGNIVVAHKTFHRYVVRAKSGKKQSSKDASGKSISSAGASLRRHNELALKKEIQDLLAAWKSYFNASSCVYIYAPSNNRQLLFNGDKPYFSDQHAAVRNIPLTVRRPTLKEARRVYEQLVQIVYEVDENEILSTTEHDSLLSAVTMDNGTRGISGQEVIGDLEKDACTHLEESVEHPKTSESESEVICRTTPLHEASQSGNADKVLELLEQGLDPCIKDERGRTPYMLASEKEVRNNFRRFMASNLDKWDWNAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLKKEKAKKAQALDAESQKAVKPEQSRGIGSSILNSWAESTSGKLIAKEMAQAAEREKRAAAAERRMAAMVAAAATNNSSLTTPSSSQTKSGLAGDVNCSCCGTSLAEPQVRRAALKMSVTLHTNLGDIKCEIFCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIKESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG | 817 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1981795 | 1990641 | + | CcPI632755_05g002510.1 | Cco05g0251 | 177879 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0251 | 817 | ProSiteProfiles | Ankyrin repeat region circular profile. | 441 | 473 | - | - | |
Cco05g0251 | 817 | MobiDBLite | consensus disorder prediction | 140 | 166 | - | - | |
Cco05g0251 | 817 | Pfam | Bacteroidetes VLRF1 release factor | 239 | 375 | IPR041175 | - | |
Cco05g0251 | 817 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cco05g0251 | 817 | MobiDBLite | consensus disorder prediction | 520 | 534 | - | - | |
Cco05g0251 | 817 | Coils | Coil | 586 | 606 | - | - | |
Cco05g0251 | 817 | MobiDBLite | consensus disorder prediction | 45 | 67 | - | - | |
Cco05g0251 | 817 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 663 | 810 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
Cco05g0251 | 817 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cco05g0251 | 817 | MobiDBLite | consensus disorder prediction | 141 | 158 | - | - | |
Cco05g0251 | 817 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 694 | 711 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) | |
Cco05g0251 | 817 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 85 | 107 | IPR013087 | - | |
Cco05g0251 | 817 | PANTHER | ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 21 | 658 | IPR047139 | GO:0030433(PANTHER) | |
Cco05g0251 | 817 | CDD | Cyclophilin_PPIL3_like | 658 | 810 | - | - | |
Cco05g0251 | 817 | MobiDBLite | consensus disorder prediction | 515 | 568 | - | - | |
Cco05g0251 | 817 | MobiDBLite | consensus disorder prediction | 45 | 73 | - | - | |
Cco05g0251 | 817 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 660 | 809 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
Cco05g0251 | 817 | Gene3D | - | 645 | 817 | IPR029000 | - | |
Cco05g0251 | 817 | SUPERFAMILY | Ankyrin repeat | 443 | 495 | IPR036770 | - | |
Cco05g0251 | 817 | Coils | Coil | 517 | 559 | - | - | |
Cco05g0251 | 817 | ProSiteProfiles | Ankyrin repeat profile. | 441 | 473 | IPR002110 | GO:0005515(InterPro) | |
Cco05g0251 | 817 | FunFam | Peptidyl-prolyl cis-trans isomerase | 658 | 817 | - | - | |
Cco05g0251 | 817 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 742 | 757 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
Cco05g0251 | 817 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 699 | 711 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
Cco05g0251 | 817 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 770 | 785 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
Cco05g0251 | 817 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 757 | 769 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
Cco05g0251 | 817 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 673 | 688 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
Cco05g0251 | 817 | SUPERFAMILY | Cyclophilin-like | 658 | 814 | IPR029000 | - | |
Cco05g0251 | 817 | Gene3D | - | 415 | 549 | IPR036770 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0251 | Cco-Chr5:1981795 | Cco10g1866 | Cco-Chr10:32255126 | 1.30E-41 | dispersed | |
Cco05g0251 | Cco-Chr5:1981795 | Cco04g1512 | Cco-Chr4:30551298 | 1.80E-48 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0251 | K26089 | - | csv:101216211 | 992.645 |