Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0251 ATGGAGAGCAATCCCGCCGCCTCCGCCGTCGTCGTTAGCAATACCCCAAGCATCCCGCCGGAGAAACGTAACCGTTCCATCTTCGACGTCCCGGCCGACTTCTTTGATTCCTGCAAACTCCTTCGTTCTCCACACTCATACACCTCATCAACCAGCGGCAGCAACAGGGACAGCTCAAGCGCAGAAAGCACAGTCGATTCGGAGCAGAACTATAGGGATTTGAAAGAAAGTCCCGTCGCCCACCGATGGACCTGCAACACATGCAAGGCCGAGTTCGAGTCCCTGCTTGACCAGCGTTCGCACTTCAAATCCGACCTTCACCGGTTCAATGTGAAACTAAGCATTGCTGGAAAGAATATTGTGAAGGAGGATGATTTTGATGAGCTGACATCTGATTCTTTCAGAGACTTTGATGTGTCAAGTATTTCTGGATCAGAGGACGAAACAGAGAAGGAGGTTAATTTTCGGAATGAAGGGCCTAAGGGAACAAGTGATACTGCGAACAAGAAGAGGTTGTTTGTTCATCTTCAAACTGGTGAAAGAGCTTCGGTCTGGAAGTGTTTGCTCATAAATGAGTCAGATAATATTTCATACGAAGATGATAAAACATCAATCAGTGGTAATGGCGTTCATGCCCAGTACCTTAGAGAGAATGAAATCATAGCAAGATTAAAATATTTAAATCATGAGCCAAGAGATGGCTCCCATTTGCGGATAGTGTTGCTTGCAAGTGGTGGGCACTTTGCGGGTTGTGTCTTCGATGGAAACATAGTTGTAGCTCATAAAACCTTTCACAGATATGTGGTGAGAGCCAAGTCTGGAAAGAAACAGTCATCAAAAGATGCAAGTGGCAAATCAATCAGTTCTGCTGGGGCTTCACTTCGTCGTCATAATGAACTGGCATTGAAGAAGGAAATTCAAGATCTCCTTGCTGCTTGGAAGTCCTACTTTAATGCTTCATCTTGCGTTTATATTTATGCTCCTTCAAACAATCGGCAATTGCTTTTTAATGGAGACAAGCCTTACTTTAGTGATCAGCATGCTGCTGTTCGGAATATTCCTTTGACTGTTCGAAGGCCTACATTGAAAGAAGCTCGGCGTGTTTATGAACAATTGGTGCAAATAGTGTATGAAGTAGATGAGAATGAAATATTGTCCACCACTGAGCACGATTCACTGTTAAGCGCAGTTACAATGGACAATGGCACCCGAGGTATAAGTGGACAGGAAGTAATTGGAGATTTGGAGAAGGATGCTTGTACACATCTTGAAGAATCTGTTGAACACCCCAAAACTAGTGAGAGTGAAAGTGAAGTTATTTGTAGAACTACACCTTTACATGAAGCATCACAGTCTGGAAATGCAGATAAGGTTTTGGAACTCCTTGAACAGGGTCTTGATCCTTGCATCAAAGATGAAAGAGGACGTACTCCTTATATGCTAGCAAGTGAGAAGGAAGTCCGAAATAACTTTAGAAGGTTCATGGCTTCAAACCTTGATAAGTGGGATTGGAATGCTGCTAAGGTGCCGAGCGCATTAACCAAGGAAATGGAGGAATCTCAAGCAGCTAAGCAGGCTGAAAAAGATGCCAAGCGAAAGGCTAGAGCAAAGGAGTTGAAAAAATTAAAGAAAGAAAAGGCCAAGAAAGCACAGGCCCTGGATGCTGAATCCCAAAAGGCTGTGAAGCCGGAACAGAGTAGAGGAATCGGCTCTTCTATTTTGAATTCTTGGGCTGAATCAACCAGTGGGAAACTGATTGCCAAAGAGATGGCACAGGCTGCTGAACGGGAAAAGAGAGCAGCAGCTGCTGAGAGAAGAATGGCAGCCATGGTCGCAGCTGCAGCTACCAACAATTCCTCGTTGACTACTCCTAGCAGCTCGCAGACTAAAAGTGGGTTGGCGGGGGATGTCAACTGCTCCTGCTGCGGTACTTCGCTGGCCGAACCGCAAGTTCGCAGAGCAGCTCTGAAAATGTCTGTTACTTTGCACACAAATCTCGGAGACATCAAGTGCGAGATTTTTTGCGATGAAGTCCCCAAGTCTGCCGAGAACTTTTTGGCACTGTGTGCAAGTGGTTACTATGATGGAACCATATTCCATCGCAATATCAAAGGTTTTATGATACAAGGTGGAGACCCAACTGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAGAAGTTTAATGACGAGATAAAAGAGTCACTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGCGCAAATACGAATGGAAGCCAATTTTTTATAACTTATGCAAAGCAGCCACATTTAAATGGATTATATACTGTTTTCGGTAGAGTGATTCATGGGTTCGAAGTACTTGATATCATGGAAAAGACACAAACTGGACCGGGTGATCGTCCTCTCGCAGAGATCAGGCTCAATCGAGTGACGATACACGCTAATCCTCTTGCAGGCTAA 2454 44.91 MESNPAASAVVVSNTPSIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSSTSGSNRDSSSAESTVDSEQNYRDLKESPVAHRWTCNTCKAEFESLLDQRSHFKSDLHRFNVKLSIAGKNIVKEDDFDELTSDSFRDFDVSSISGSEDETEKEVNFRNEGPKGTSDTANKKRLFVHLQTGERASVWKCLLINESDNISYEDDKTSISGNGVHAQYLRENEIIARLKYLNHEPRDGSHLRIVLLASGGHFAGCVFDGNIVVAHKTFHRYVVRAKSGKKQSSKDASGKSISSAGASLRRHNELALKKEIQDLLAAWKSYFNASSCVYIYAPSNNRQLLFNGDKPYFSDQHAAVRNIPLTVRRPTLKEARRVYEQLVQIVYEVDENEILSTTEHDSLLSAVTMDNGTRGISGQEVIGDLEKDACTHLEESVEHPKTSESESEVICRTTPLHEASQSGNADKVLELLEQGLDPCIKDERGRTPYMLASEKEVRNNFRRFMASNLDKWDWNAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLKKEKAKKAQALDAESQKAVKPEQSRGIGSSILNSWAESTSGKLIAKEMAQAAEREKRAAAAERRMAAMVAAAATNNSSLTTPSSSQTKSGLAGDVNCSCCGTSLAEPQVRRAALKMSVTLHTNLGDIKCEIFCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIKESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1981795 1990641 + CcPI632755_05g002510.1 Cco05g0251 177879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0251 817 ProSiteProfiles Ankyrin repeat region circular profile. 441 473 - -
Cco05g0251 817 MobiDBLite consensus disorder prediction 140 166 - -
Cco05g0251 817 Pfam Bacteroidetes VLRF1 release factor 239 375 IPR041175 -
Cco05g0251 817 MobiDBLite consensus disorder prediction 1 24 - -
Cco05g0251 817 MobiDBLite consensus disorder prediction 520 534 - -
Cco05g0251 817 Coils Coil 586 606 - -
Cco05g0251 817 MobiDBLite consensus disorder prediction 45 67 - -
Cco05g0251 817 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 663 810 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g0251 817 MobiDBLite consensus disorder prediction 1 21 - -
Cco05g0251 817 MobiDBLite consensus disorder prediction 141 158 - -
Cco05g0251 817 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 694 711 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cco05g0251 817 ProSitePatterns Zinc finger C2H2 type domain signature. 85 107 IPR013087 -
Cco05g0251 817 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 658 IPR047139 GO:0030433(PANTHER)
Cco05g0251 817 CDD Cyclophilin_PPIL3_like 658 810 - -
Cco05g0251 817 MobiDBLite consensus disorder prediction 515 568 - -
Cco05g0251 817 MobiDBLite consensus disorder prediction 45 73 - -
Cco05g0251 817 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 660 809 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g0251 817 Gene3D - 645 817 IPR029000 -
Cco05g0251 817 SUPERFAMILY Ankyrin repeat 443 495 IPR036770 -
Cco05g0251 817 Coils Coil 517 559 - -
Cco05g0251 817 ProSiteProfiles Ankyrin repeat profile. 441 473 IPR002110 GO:0005515(InterPro)
Cco05g0251 817 FunFam Peptidyl-prolyl cis-trans isomerase 658 817 - -
Cco05g0251 817 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 742 757 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g0251 817 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 699 711 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g0251 817 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 770 785 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g0251 817 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 757 769 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g0251 817 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 673 688 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco05g0251 817 SUPERFAMILY Cyclophilin-like 658 814 IPR029000 -
Cco05g0251 817 Gene3D - 415 549 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0251 Cco-Chr5:1981795 Cco10g1866 Cco-Chr10:32255126 1.30E-41 dispersed
Cco05g0251 Cco-Chr5:1981795 Cco04g1512 Cco-Chr4:30551298 1.80E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0251 K26089 - csv:101216211 992.645