Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0258 ATGGATCGAGCCACCGCCGCACACGGCCGTCCGCTTCCGCCGCCGTTCATTTCAAGAAACCTCCATCTCAATCCCCGCCACCATTTCCTCCACCAAAACTCCGATCAACAGCACAATGGAAATAGTAGCTCCGGCGGCGACGGCGGCCGAGACGGTGAGGTCTTGAGACGACCACGAGGCCGCCCCGCCGGGTCGAAGAACAAGCCGAAGCCGCCGATGATAATCACACGTGATAGCGCCAACGCACTCCGGTGCCACGTCATCGAAATCGCCAACGCCAATGACGTGATCGAAACCCTCACGATTTTCGCACGAAAGCGCCAGCGTGGCATTTGCGTGCTGACCGGCGCCGGAGCGGTCACCAACGTCACCCTCAAGCAGCCGGGGGCCGCGGTCGCCGCCGCTGGACCGGTGATCTCTCTGCCGGGGAGATTTGAGATTCTGTCGTTGTCGGGGTCGTTTCTGCCGCCGCCAGCCCCGGCGGCGGCGTCTGGGCTGACCGTGTACTTGTCCGGCGGGCAGGGGCAGGTGGTAGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCAGTGGTGATTACGGCTGCTTCATTTGGAAACGCAGCGTACGAGAGGCTGCCGGTGGAGGATGATGACGTGGAAGCGGCAACAGCGGCGGATGCCAGAAGTAGTCCGATCAGGTCACCGGAAAACGCCGTGCAACAGCAACAATTTTTGCCGGAACTTCATGGATTGGCGCCGCATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGAGCACAGGTCGTACTCCACCATTTTAG 813 61.13 MDRATAAHGRPLPPPFISRNLHLNPRHHFLHQNSDQQHNGNSSSGGDGGRDGEVLRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTIFARKRQRGICVLTGAGAVTNVTLKQPGAAVAAAGPVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDVEAATAADARSSPIRSPENAVQQQQFLPELHGLAPHLMNTCQLPTEPYWSTGRTPPF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2040441 2041253 - CcPI632755_05g002580.1 Cco05g0258 177886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0258 270 FunFam AT-hook motif nuclear-localized protein 83 215 - -
Cco05g0258 270 MobiDBLite consensus disorder prediction 1 74 - -
Cco05g0258 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 224 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cco05g0258 270 Gene3D - 83 218 - -
Cco05g0258 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 199 IPR005175 -
Cco05g0258 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Cco05g0258 270 CDD DUF296 84 155 IPR005175 -
Cco05g0258 270 ProSiteProfiles PPC domain profile profile. 80 220 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0258 Cco-Chr5:2040441 Cco06g1635 Cco-Chr6:26963497 3.60E-57 dispersed
Cco05g0258 Cco-Chr5:2040441 Cco05g0263 Cco-Chr5:2106531 1.80E-16 proximal
Cco01g0360 Cco-Chr1:3573258 Cco05g0258 Cco-Chr5:2040441 2.10E-69 wgd
Cco05g0258 Cco-Chr5:2040441 Cco06g0033 Cco-Chr6:328259 3.80E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0258 - - - 0.0