Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0262 ATGAATCAGAGCAAAATTGAAGAGGATCTCTTCCATCACCACCGTCTACACGATGATCTCGACCCACTTGCGACCCAGATCATTGAATCTCAGCCGTCCATTCCGAATTCGCACCACGGCGAACCGCCGTTCTCTTTGCCGGAAATCGTGCTCTTCCGGTCGCCGTCTCCGTCGTCCCCAAGTCATTCGTCCTCTGATGATTCCCCGACTCACTCCACTCGGATGAGTCAACTCGTTCAGAACCCTACATCGACTTCGCAAAATCTTCACGAACCGCCTCTCTATATCTCGCCGGAGCCTCACATATCGGCTCAGTTTTATACCTTTAATCCCGAGTCGCACTCGTTGATGATCCGTTGTATTCTCGAGCACCGCCTTGCGACGCCGAGTGAGATACGCGCCGCCACATCGCGTTCCGTTCTCAAGTCGTGGAGGACCGTGTGGAAGGACCGGAACGAGGACACTGCGTATCTGACGGCATGGAAGAGAATCCAGGACAAGCTTACGGCAACGGTCGACGAAAACGGTAACGAATTTCTCTGTTTCAAGAATAATACTCAGCAGTTCGTTTCGCATATTAGTCAATGGCAGGACATTGTTACGAGTTTTCATGGAGATACGGATTTGAAACATTTAGGGTTGAAGGAAACCATAGAGAGAATTAAGCAGGTTTGGACTGTAGGTGCTAAATTTTATGGGATTCCTGAGAGTTACATTAGGGTTTGTGTTGCTGCTTGCCCTGTTTGTAATTCAGCGTCCTCGGCGTCAGGTTCGAGGAGTAAACGGCGGAGGTTTGAGTATACGGATACTCTTGAGGTGCCTGCAAAGGAAGTGCCACACAAGCTTCAGCAATTGGCTGCTAAACATAAGGTGGTGCTTTGTATTAGGCAGAAGTATATTAGGTATAAGCCTTTCATGGCGGAGGTTAAGGATTATGCTTGTCATAGGGCAGGGGAACCTGCTACGAAGAAGTCGAAGATTTTGAAAAGGGAGCCATATGCATCGAAGAGATGCGGGTGTGGATTTCGTATCCGGGCCATTGTACCCATTACAAATTACAACGAGAAGGATAAAACATTTGTGTATCAGGATGAGGGTGTGGCTGTGTTCAAATTGTATGCTGTGCATTCAGGGCATGAACCTGGGCCACTGGATGGAAATGCGAGAATTATGCATCGTGTGATCGGACACAAAGGTGGCCTGTTAATGGATCATGATACAGTGTATGGGGTGAATGATGAAATGGAAAATGAAGGATTTAGACTTATGGGGAAGGATGAAGCAGATTTGCAGCTTTCAATCTTGCAGCAGGTGCATGAGGTGAGAAATGAGCTTGACTTGTTAGAGGGGAAACTTGCAAAGGTTCCACACGAGCTATTGGGTTCAGTGTCTCGCGATTTGTTCGACGTTTTAAGTAGACTTAGGAGTACAAGGGAGGAGAAATTGGACCCGATCGATCTGCTTGCAGATAAGCCTCATTCAGATGATGTTTTAGATGGGGAGAATGATTTGGCTCATTGGAGCAATCACCATCATGAACGTCTATATGGGGATGGCAAAGACAGTGAATTGATTGAGGACGATGTAGACAGTTTTGGTCACTCCCTTCGAGATGTTGTTCCTTGGGAGGACCATATGAGGGCAGACTGTAGAAATCAGAAAGAACTGACAAGCGAGCCTTGCAAACCCGAAAGATGGTTTAAATGCACTGACTTCAATGATAAAAGCATTCTTGGCTGTGAGGATACAAAACTAATTAAGCCCATGAGACATGATGAGAGCATGGTGGCAGATGTAGGTCTTGTCGGTATACATGTTGACGGATTTTACCCAGAGAACCCTAAATGGTATGACTCTCCTTGTGATCTAGACTCTAATGCAGATTGTGGAGATACTGGATTTAAGCACGGGGAGATTGTGTTGTATAGACTGCTATCTGTACAAATCTCCGGTCGCTCACCTCCAGAAGAAAGAAAGATTCTCACGCCTCCCCTTGAATCTAAAGTAAGCAGGAGTTCTACCCGCCCGGTGACCAGCTTCGTTGGGTTTGGAACGATTGGGCTTAGCCCGAATCTATTTTCTGGGCTTGGGCTTCAAGCCCAATCGAAGTACAATTTCACTCTGGGCCAGAAGAAGCTCTACTGGCACAATTCTTCTTCGTCTAGGAAAAAAGACTTTAAGCTTTGCTTAGCTTTTCCTGAAAGAACGCAAGCAAGCAAGGCTGAGATGAGCTTGAGGCGCAGCCGCGGAAGTTGCCCGGAAGGCAAAGGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGTACAACTCATTTTGCAGCCGTGCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGATGATTCTACATATTCCTGAACACAAACGGCTCGATGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTCCAACAACAGGCTGCAAGGTTGCAAGTAGAGATCTCATATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCAATCTACAGGCACAGCCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAACCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCGACTTCTCGATCCCATCGAGCCAGCTTCACGGCCGAAGTTGCAGTCTCCATTGGAATTGTCCCAAATTGGAAGCAACAGTTTCCCATCCATGGGCAGCATTGATCAGCAAATCGTCCAGAAACAACTGGCCTCAATGCAACACATTGGTGCCTCGCTATTTCCGTGCGTCCCTAAACGAGCCTAA 2904 47.49 MNQSKIEEDLFHHHRLHDDLDPLATQIIESQPSIPNSHHGEPPFSLPEIVLFRSPSPSSPSHSSSDDSPTHSTRMSQLVQNPTSTSQNLHEPPLYISPEPHISAQFYTFNPESHSLMIRCILEHRLATPSEIRAATSRSVLKSWRTVWKDRNEDTAYLTAWKRIQDKLTATVDENGNEFLCFKNNTQQFVSHISQWQDIVTSFHGDTDLKHLGLKETIERIKQVWTVGAKFYGIPESYIRVCVAACPVCNSASSASGSRSKRRRFEYTDTLEVPAKEVPHKLQQLAAKHKVVLCIRQKYIRYKPFMAEVKDYACHRAGEPATKKSKILKREPYASKRCGCGFRIRAIVPITNYNEKDKTFVYQDEGVAVFKLYAVHSGHEPGPLDGNARIMHRVIGHKGGLLMDHDTVYGVNDEMENEGFRLMGKDEADLQLSILQQVHEVRNELDLLEGKLAKVPHELLGSVSRDLFDVLSRLRSTREEKLDPIDLLADKPHSDDVLDGENDLAHWSNHHHERLYGDGKDSELIEDDVDSFGHSLRDVVPWEDHMRADCRNQKELTSEPCKPERWFKCTDFNDKSILGCEDTKLIKPMRHDESMVADVGLVGIHVDGFYPENPKWYDSPCDLDSNADCGDTGFKHGEIVLYRLLSVQISGRSPPEERKILTPPLESKVSRSSTRPVTSFVGFGTIGLSPNLFSGLGLQAQSKYNFTLGQKKLYWHNSSSSRKKDFKLCLAFPERTQASKAEMSLRRSRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMILHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAYLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEPASRPKLQSPLELSQIGSNSFPSMGSIDQQIVQKQLASMQHIGASLFPCVPKRA 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2078869 2087025 - CcPI632755_05g002620.1 Cco05g0262 177890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0262 967 PANTHER EXPRESSED PROTEIN 50 640 - -
Cco05g0262 967 MobiDBLite consensus disorder prediction 32 90 - -
Cco05g0262 967 ProSiteProfiles LOB domain profile. 759 861 IPR004883 -
Cco05g0262 967 MobiDBLite consensus disorder prediction 52 90 - -
Cco05g0262 967 Pfam Lateral organ boundaries (LOB) domain 760 858 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0262 Cco-Chr5:2078869 Cco07g0094 Cco-Chr7:951063 1.60E-38 dispersed
Cco05g0262 Cco-Chr5:2078869 Cco06g0035 Cco-Chr6:348355 6.60E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59209 PF03195 LOB 3.10E-35 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0262 - - - 0.0