Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0263 ATGGAAGAGAGAGAAGCCATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAACCGAGAACCCGCCGGCCGGCGGCGGTTCGCCAACCGTCGCTGCCTCGCCGGTAAGCGTGGGGCTACCCGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAGTACGGCCCGGATGGAACGGTAACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCAGCCGGTGGCTTCTCCATTACCAAGCGGGGGAAGGGCCGGCTCGGCGGCTCCGAATTCAAACATCACAAGAAAATGGGAATGGAATATATAGGAGAATGGAATGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGCCCTCGAGCAATCTGTATTCTTTCTGCTAATGGAGTAATTTCGAATGTCACTCTTCGGCAGCCGGATTCTTCGGGTGGTACTTTAACATATGAGGGCCGTTTTGAAATACTTTCTTTATCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCTAGCCCTGATGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGCCCTGTACAGGTTGTGGTAGGGAGTTTTCTACCAACTAGCCAACAGGAACAGAAGGTAAAGAAACAGAAGCCCGAGTCGGTACCAGCTGCAGCCCCTGTTGCAGTCCCGAGCACGGCACCAGCCACCACTGTGCCGCCTTCGAATGCAGATACAGATGACAGTTTAAATGGGAATGGTCTGCAAAATGCCGGGTCGTTAAAACCGGCCAGTTTCGCTCCTTCACCTTTCCAGAGAGACAATTGGGGTACCAATGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATTCCGCTACCGACATCAATATTTCGCTGCCAGGCTAA 1026 52.34 MEEREAINAGVTVIGAEAPSAYHVAPRTENPPAGGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVAVPSTAPATTVPPSNADTDDSLNGNGLQNAGSLKPASFAPSPFQRDNWGTNAAVHSLQEPRNSATDINISLPG 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2106531 2110717 + CcPI632755_05g002630.1 Cco05g0263 177891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0263 341 MobiDBLite consensus disorder prediction 311 341 - -
Cco05g0263 341 Gene3D - 131 260 - -
Cco05g0263 341 MobiDBLite consensus disorder prediction 275 303 - -
Cco05g0263 341 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Cco05g0263 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 244 IPR005175 -
Cco05g0263 341 CDD DUF296 131 244 IPR005175 -
Cco05g0263 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 250 - -
Cco05g0263 341 MobiDBLite consensus disorder prediction 248 341 - -
Cco05g0263 341 MobiDBLite consensus disorder prediction 18 71 - -
Cco05g0263 341 ProSiteProfiles PPC domain profile profile. 126 266 IPR005175 -
Cco05g0263 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 283 IPR039605 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0365 Cco-Chr1:3642339 Cco05g0263 Cco-Chr5:2106531 4.30E-89 dispersed
Cco04g1180 Cco-Chr4:27230573 Cco05g0263 Cco-Chr5:2106531 6.00E-16 dispersed
Cco05g0263 Cco-Chr5:2106531 Cco11g0056 Cco-Chr11:602073 3.30E-76 dispersed
Cco05g0258 Cco-Chr5:2040441 Cco05g0263 Cco-Chr5:2106531 1.80E-16 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0263 - - - 0.0