Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0266 ATGGACTTCCAAGCTCACTCTCTGAAAAGCTCCGACGATTCGTCAACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTTAAGTATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCAGACTCTTGCGCGATTTTGCTGTATCTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCTGCTGATCTTCGTTTAAAATCTCTTAATCTGCAAGTGGCAAGTATCATCAGCTCAAGCATACAGCCTGTCATTATGATGGGATTGCTGAAAACTATCGAGGAAAAATTTGGTCCAGAAGAGCAACTGCCATGGGCTCAGTCCAATTTAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGCCAATATGCCTTGGGAGATGAAGTATACATGGCTGATGTGTTTTTGGCCCCCCAAATTTCAAATGCTATTGAGAACTTCGACACTGACATGTCTAAGTTTCCTACCTTAGCAAGAATTTATGAATTTTACAAGAAGTTACCAGAATTCCAAGCCTCGTCACCAGAAAGGCAGCCTGACGCCCTTCATTAG 690 43.77 MDFQAHSLKSSDDSSTSSKLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQLSPDFERLNPLKYVPVLVDGPVVVSDSCAILLYLEEKYPQKALLPADLRLKSLNLQVASIISSSIQPVIMMGLLKTIEEKFGPEEQLPWAQSNLEKGFNALEKLLKDFSGQYALGDEVYMADVFLAPQISNAIENFDTDMSKFPTLARIYEFYKKLPEFQASSPERQPDALH 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2125212 2127863 + CcPI632755_05g002660.1 Cco05g0266 177894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0266 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 18 99 IPR004045 -
Cco05g0266 229 Gene3D Glutaredoxin 22 98 - -
Cco05g0266 229 FunFam Glutathione S-transferase Z1 18 102 - -
Cco05g0266 229 SFLD Main (cytGST) 20 208 - -
Cco05g0266 229 Pfam Glutathione S-transferase, N-terminal domain 22 98 IPR004045 -
Cco05g0266 229 FunFam Maleylacetoacetate isomerase 103 229 - -
Cco05g0266 229 CDD GST_C_Zeta 108 224 IPR034330 -
Cco05g0266 229 SUPERFAMILY GST C-terminal domain-like 100 227 IPR036282 -
Cco05g0266 229 PANTHER MALEYLACETOACETATE ISOMERASE 18 227 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Cco05g0266 229 CDD GST_N_Zeta 21 92 IPR034333 -
Cco05g0266 229 Gene3D - 101 229 - -
Cco05g0266 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 104 229 IPR010987 -
Cco05g0266 229 NCBIfam maleylacetoacetate isomerase 22 227 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Cco05g0266 229 SFLD Glutathione Transferase (cytosolic) 20 208 IPR040079 -
Cco05g0266 229 Pfam Glutathione S-transferase, C-terminal domain 144 215 IPR004046 -
Cco05g0266 229 SUPERFAMILY Thioredoxin-like 18 102 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0032 Cco-Chr2:410049 Cco05g0266 Cco-Chr5:2125212 3.60E-71 dispersed
Cco05g0266 Cco-Chr5:2125212 Cco05g0426 Cco-Chr5:3499508 8.10E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0266 K01800 - csv:101213403 389.037