Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0282 ATGCCCTTCCCCGTCGCTACCTTTCTACTCCTCTTCTTACCCCTGGTAGTGGTGGCTTCCTCTATTTCTTCGTTGCCCGAGCTGGACCCGGTTCGGTTGGCCCAGACCGGGATTGCGGAAGCCAGAACCGAAATAGGTAAGTTAAAACGACGTCGATTTGGGCTTAGCGATTGCTCTACGCTCTACGAGGAGGCGGACTGGCGGCTCGCCGGGATGTTGGTTGGAGAGAATTATACGGCGGAAGATGCTCGGGCGTGGCTTAGCGCCGCCGTGGCTAACCATCGGAGTTGTTTGGATGGCTTGGAAGAGGTTGGTGCCGCGACGGCGGTGGAATATGGGAATAACTTGACCATGATGCTCACCGGAGCTCTGCATTTATACGACAACATTGCTGCCGTGGAGAAGCGGAAGGGAAGGGAAGTAGTGAAGAAACAGAAATGGAGAGAAAACAGAGGAATGGACTTGGCGAAGTGGAATCCGGTGACCTCGAAGGCAGACTACGTGGTGGCGAAGGACGGGTCCGGCACCCACACAACCATAAACGGGGCGGTGGCGACTCTGGCGAGGACTGGACGAAGACGGCGGGGGGAGAGAATTGTGATATACGTGAAAGCCGGTGTTTACAAGGAAAATGTGGAAATTGGAATACAGTTGAAGAACGTCATGGTTGTTGGTGACGGCGCAGACAAAACCATCGTCACCGGTAGCCGCAACGTGCCCGACGGTGCCACAACTTATAACTCAGCTACATTTGGTGTTTCCGGCGATGGATTTTGGGCGAGGGACATAACTTTCGAGAACACAGCCGGACCGGAAAAGCAACAGGCGGTGGCGCTACGGCTGAATTCTGACCTTGCCGTCGTATATCGGTGCGCAATAAAAGGTTATCAGGACACGCTCTTCCTCCACTCCCTCCGCCAATTCTACCGCGACTGCCAAATCTACGGCACCATCGATTTCATTTTCGGGAACTCCGCCGCCGTCCTCCAGAACTGCGAAATCTTCGTCCGACGACCGATTCGCCACCAGGCTAACATGATCACCGCCCAAGGTCGCGACGATCCGGCCGAGCCTACCGGAATTTCCATCCTCAACTCCAGAGTCCAGCCGGCGCCGGATTTCGCACCCGTAAAGGCTCAATATAGAACCTACCTCGGCCGCCCGTGGAAGCGGTTTTCGAGGACGGTGGTTATGGCGACAGATTTGGACGGATTGATCGATCCGAAAGGGTGGGGAGAGTGGAGGGGGGATTTTGCGATTTCGACTTTGTTTTATGCAGAGTTTAAGAACAGGGGCGGCGGTTCTTCGACGAGATTTAGGGTTAATTGGCCGGGGTTTCACGTCCTCCATAGCGCGGAGGAGGCGCGACCTTTCACGGTGGCTGAGTTTCTTCACGGCGGCGCTTGGATTCCGGCCACCGGCGTACCCTTCGAGGCGGGCGTTTGA 1446 55.88 MPFPVATFLLLFLPLVVVASSISSLPELDPVRLAQTGIAEARTEIGKLKRRRFGLSDCSTLYEEADWRLAGMLVGENYTAEDARAWLSAAVANHRSCLDGLEEVGAATAVEYGNNLTMMLTGALHLYDNIAAVEKRKGREVVKKQKWRENRGMDLAKWNPVTSKADYVVAKDGSGTHTTINGAVATLARTGRRRRGERIVIYVKAGVYKENVEIGIQLKNVMVVGDGADKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVVYRCAIKGYQDTLFLHSLRQFYRDCQIYGTIDFIFGNSAAVLQNCEIFVRRPIRHQANMITAQGRDDPAEPTGISILNSRVQPAPDFAPVKAQYRTYLGRPWKRFSRTVVMATDLDGLIDPKGWGEWRGDFAISTLFYAEFKNRGGGSSTRFRVNWPGFHVLHSAEEARPFTVAEFLHGGAWIPATGVPFEAGV 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2267585 2270876 - CcPI632755_05g002820.1 Cco05g0282 177910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0282 481 Pfam Pectinesterase 167 466 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco05g0282 481 Gene3D - 160 481 IPR012334 -
Cco05g0282 481 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 135 IPR035513 -
Cco05g0282 481 Pfam Plant invertase/pectin methylesterase inhibitor 32 109 IPR006501 GO:0004857(InterPro)
Cco05g0282 481 SUPERFAMILY Pectin lyase-like 162 479 IPR011050 -
Cco05g0282 481 PANTHER PECTINESTERASE 51 472 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco05g0282 481 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 129 IPR035513 -
Cco05g0282 481 ProSitePatterns Pectinesterase signature 2. 314 323 IPR033131 -
Cco05g0282 481 FunFam Pectinesterase 160 481 - -
Cco05g0282 481 SMART PMEI_2 13 133 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0282 Cco-Chr5:2267585 Cco05g0884 Cco-Chr5:7629229 5.00E-110 dispersed
Cco05g0282 Cco-Chr5:2267585 Cco05g0283 Cco-Chr5:2282460 7.20E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0282 K01051 - csv:101217635 793.882