Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0283 ATGGGAAGGCATTCGACCACCTTTGTTGTTGTTCTTATTGTTCTTGTTATTCCGACCGACATTTTTTGTTATTCCGAAAAAGAAATAAAACATTGGTGTAGCCAAACGCCATATCCAGCTCCATGTGAGGAATTTCTCAAAACCAAAGCCTTAACAAAGAAATCTCCAATCGCCAATAAATCCCATTTCTTTGAAATCTTAGTCGAAACGGCACTCGAACGTGCCGTTTCGGCCCATAAAAACGCTCTTTCTCTCGGCCCAAAATGCCGAAATGCCAAAGAAAAAACCGCATGGACTGATTGTGTTGACCTCTACGACCAAATCATAACCCGCCTCAACCGAACCGCCGACCGCTGCTCCCCGGTCGACGCACAAACCTGGCTCAGCGCCGCTCTCACCGCCCTCGAAACCTGCCGGACCGGGTTCGAGGAGCTCGGGGTTTCGGCTTTCGGCTACTCATTGACGGCCAATAATGTTTCGAAGCTGATTAGCGATGGGTTGTCGGTGAATAAACCGCCGTCGCCGGAGGGGTATGAACCGCAGACCATGGCGGAGGGGTTTCCGACGTGGGTTAGGCCCGGTGACCGGAGATTGCTGCAGGCGGGGTCTCCGAAGGCGAACGTGGTGGTGGCGAAGGATGGGTCAGGGAATTTTCAGACGGTGAAGGAGGCGGTGGCCGCCGCGAAGGGCGGCGGGAGATTTGTGATATATGTGAAGGCGGGGGTTTATAGCGAGAATGTGGAGATTAAGGCTAAGAATGTCATGTTGATCGGAGATGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGAGGTTCCACCACGTTCAGATCCGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCGCGAGACATAACCTTCAGAAACACAGCCGGAGCAAAGAACCACCAGGCGGTGGCGCTCCGATCGGGTTCCGATCTCTCCGTCTTCTACCGTTGCGGCTTCGAAGGCTTTCAAGACACTCTCTACGTTTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTAATCCAAGATTCCAACATCATCGCTCGCGATCCTCCCAACAAAACCATCACACTCACCGCCCAAGGCCGCACCGATCCGAATCAGAACACCGGAATCTCCATCCACAATTGCAGAGTCACCTCCGCCGGCGGCCTCAGCGGCGTCAAGGCCTATTTAGGCCGCCCGTGGAAGCAGTACTCGCGGACGGTTTTTATGAAATCGTCGATCGGAGGATTCATCAGTCCGGCGGGGTGGATGGAGTGGAGCGGTAATTTTGCCCTAAATACGCTGTATTACGGCGAGTATATGAATACCGGTCCGGGAGCGTCGACGGCGAACCGAGTGAAATGGAAGGGTTATCATGTGATAACCAGTGCGGCGGAGGCTTCGAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGAGTACCGGCGTGCCTTTCACCTCCGGCCTCTGA 1530 53.99 MGRHSTTFVVVLIVLVIPTDIFCYSEKEIKHWCSQTPYPAPCEEFLKTKALTKKSPIANKSHFFEILVETALERAVSAHKNALSLGPKCRNAKEKTAWTDCVDLYDQIITRLNRTADRCSPVDAQTWLSAALTALETCRTGFEELGVSAFGYSLTANNVSKLISDGLSVNKPPSPEGYEPQTMAEGFPTWVRPGDRRLLQAGSPKANVVVAKDGSGNFQTVKEAVAAAKGGGRFVIYVKAGVYSENVEIKAKNVMLIGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGFQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDSNIIARDPPNKTITLTAQGRTDPNQNTGISIHNCRVTSAGGLSGVKAYLGRPWKQYSRTVFMKSSIGGFISPAGWMEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2282460 2287147 + CcPI632755_05g002830.1 Cco05g0283 177911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0283 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Cco05g0283 509 SMART PMEI_2 24 169 IPR006501 GO:0004857(InterPro)
Cco05g0283 509 Gene3D - 202 509 IPR012334 -
Cco05g0283 509 FunFam Pectinesterase 201 509 - -
Cco05g0283 509 NCBIfam pectinesterase inhibitor domain 4 161 IPR006501 GO:0004857(InterPro)
Cco05g0283 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 168 IPR006501 GO:0004857(InterPro)
Cco05g0283 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco05g0283 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 171 IPR035513 -
Cco05g0283 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Cco05g0283 509 CDD PMEI-like_3 32 174 - -
Cco05g0283 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
Cco05g0283 509 PANTHER PECTINESTERASE 9 500 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0283 Cco-Chr5:2282460 Cco05g0884 Cco-Chr5:7629229 1.10E-155 dispersed
Cco05g0282 Cco-Chr5:2267585 Cco05g0283 Cco-Chr5:2282460 7.20E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0283 K01051 - csv:101217552 930.243