Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0293 ATGCTCTCTTCACATTTCCTACCTTCGAGAAACCCTATTTCCACCAACCCCACTTCCCCTTTTTCCCTATTTTACCCAAATCTCCTCCCAACCGTCCGATCGAAATCTACCAATCGCCCACAAATCTCTGCCTTCTCCACCATTAATGGCGTCTCTTCAAAACCCACGTCTCAGATTCTCAATCCAATCCCCAAATCGAGCAAATTCTGCAAAAATCCAGTGAACCCATTTCGGTTTCTTCCGTGCAAACCTAACCCCCTTGTCCCCGCCGCCGCTGCCGCAGACGGCGGCGATACCACCGCTGATTCCGCCTCCAATGGTAAAACCTTTCAGCTCGCCATCGTCTTTGGGCTCTGGTATTTTCAGAACATCGTCTTCAATATCTACAACAAGAAGGTTCTCAACATTTTCCCTTTCCCATGGCTTCTCGCTTCGTTTCAACTCTTCGCTGGATCGGTTTGGATGCTCGTTCTTTGGTCCTTTAAGCTTCAGCCATGCCCTAAAATCTCAAAGCCCTTTCTAATCGCTCTCCTCGGCCCCGCTTTGTTTCACACAATCGGCCATATCTCTGCCTGCGTTTCGTTCTCAAAAGTCGCTGTTTCTTTCACTCATGTCATTAAATCGGCCGAACCGGTCTTCTCGGTTCTTTTCTCCTCGTTCCTCGGCGATTCGTATCCAATCCAGGTCTGGCTTTCGATTCTCCCCATTGTTTTTGGCTGTTCTTTGGCCGCCATTACTGAAGCTACCTTCAATTTTGAAGGTCTATCAGGCGCCATGATTAGCAATGTAGGGTTTGTGTTAAGAAACATTTACTCCAAAAGGAGCTTGCAGAACTTCAAGGAGGTTAATGGGTTGAATTTATATGGTTGGATTAGTATAATTTCTTTGTTGTATCTGTTTCCTGTGGCCATTTTCGTCGAAGGGTCAAAATGGGTTCAAGGATATCATCAAGCAATTGCTTCCATTGGAAATGCTTCAACATTATATATCTGGGTTTTGATTTCTGGCATATTTTATCATCTTTATAATCAATCTTCGTACCAAGCTTTGGATGAGATCAGTCCTTTGACATTCTCTGTTGGAAATACAATGAAGAGAGTGGTTGTGATTGTGGCTTCTGTTTTGGTTTTTAGAAATCCAGTTAGGCCTTTAAATGCTGTTGGTTCTGCCATTGCCATTTTTGGGACTTTTCTGTATTCTCAGACAACAACTAAAAAGAGTGCTAAGAAGATTGAGGAAGGTGAAAAGAAGGAATGA 1257 43.99 MLSSHFLPSRNPISTNPTSPFSLFYPNLLPTVRSKSTNRPQISAFSTINGVSSKPTSQILNPIPKSSKFCKNPVNPFRFLPCKPNPLVPAAAAADGGDTTADSASNGKTFQLAIVFGLWYFQNIVFNIYNKKVLNIFPFPWLLASFQLFAGSVWMLVLWSFKLQPCPKISKPFLIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVLFSSFLGDSYPIQVWLSILPIVFGCSLAAITEATFNFEGLSGAMISNVGFVLRNIYSKRSLQNFKEVNGLNLYGWISIISLLYLFPVAIFVEGSKWVQGYHQAIASIGNASTLYIWVLISGIFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVASVLVFRNPVRPLNAVGSAIAIFGTFLYSQTTTKKSAKKIEEGEKKE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2349812 2351068 - CcPI632755_05g002930.1 Cco05g0293 177921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0293 418 PANTHER SOLUTE CARRIER FAMILY 35 108 402 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Cco05g0293 418 SUPERFAMILY Multidrug resistance efflux transporter EmrE 290 401 - -
Cco05g0293 418 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 111 409 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco05g0293 418 Pfam Triose-phosphate Transporter family 111 400 IPR004853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1463 Cco-Chr1:26450301 Cco05g0293 Cco-Chr5:2349812 1.50E-62 dispersed
Cco05g0293 Cco-Chr5:2349812 Cco05g1659 Cco-Chr5:23174210 4.30E-86 dispersed
Cco05g0293 Cco-Chr5:2349812 Cco04g1994 Cco-Chr4:34114037 1.70E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0293 K15283 - csv:101219051 739.954