Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0297 ATGGAAGAAGAGCTGAAACTATTCAGAACGTGGTCGAGTCCGTTCCCTCTGAGGATAGTATGGGCGTTGAAATTGAAAGGATTAGAATACGATACCGTTTACGAAGATCTGGCCAACAAGAGCCCCTTGCTTTTGGAGTACAATCCGATTCATAAGAAAGTTCCGGTGCTCGTCCATGGCGGAAAGCCGATCGCCGAATCGCTCGTTATTCTTGAATACATCGACGAAACATGGAAGCAACATCCATTGCTGCCTCAGGATCCTTACCAGAGAGCCGTTGCTCGCTTTTGGGCCAAATTTGGGGATGACAAGGTTTTGGTATCTATAAAGAAAGTGTTTATGAACCAAGGGAAAGTGAGAGAGGAAGGTGTGGAAGAAGCCTTGGAGAATTTGAAGCATTTGGAAGAAGAGTTAAAAGGAAAGAGGTTCTTTGGAGGGGAGGCCATTGGGTTTGTGGATATTACAGTTGGGTGGCTTGCAAACTTAGTAAGTGTATTGGAGGAAGTTGTTGGAGTTGAACTGATAACTGAAGAAAGGTTTCCCCTCTTGTCCAAATGGATAAAGGAATTTGCTGCTTCTCCAATCATCAATGAAAACTGGCCGCCTAGAGACAAGCTTGTCACTAAGTACCAAGCAATGCATCAAACTTTTATGAATAAACAAGCATAA 669 43.65 MEEELKLFRTWSSPFPLRIVWALKLKGLEYDTVYEDLANKSPLLLEYNPIHKKVPVLVHGGKPIAESLVILEYIDETWKQHPLLPQDPYQRAVARFWAKFGDDKVLVSIKKVFMNQGKVREEGVEEALENLKHLEEELKGKRFFGGEAIGFVDITVGWLANLVSVLEEVVGVELITEERFPLLSKWIKEFAASPIINENWPPRDKLVTKYQAMHQTFMNKQA 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2362607 2364820 - CcPI632755_05g002970.1 Cco05g0297 177925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0297 222 Pfam Glutathione S-transferase, C-terminal domain 115 194 IPR004046 -
Cco05g0297 222 SUPERFAMILY GST C-terminal domain-like 76 217 IPR036282 -
Cco05g0297 222 FunFam Tau class glutathione S-transferase 84 220 - -
Cco05g0297 222 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cco05g0297 222 Gene3D Glutaredoxin 1 83 - -
Cco05g0297 222 SUPERFAMILY Thioredoxin-like 5 105 IPR036249 -
Cco05g0297 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 210 IPR010987 -
Cco05g0297 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 211 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cco05g0297 222 SFLD Main (cytGST) 2 221 - -
Cco05g0297 222 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Cco05g0297 222 FunFam Tau class glutathione S-transferase 1 86 - -
Cco05g0297 222 Coils Coil 121 141 - -
Cco05g0297 222 CDD GST_C_Tau 88 207 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cco05g0297 222 Gene3D - 84 221 - -
Cco05g0297 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cco05g0297 222 CDD GST_N_Tau 5 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0952 Cco-Chr4:25131113 Cco05g0297 Cco-Chr5:2362607 9.10E-36 dispersed
Cco04g0953 Cco-Chr4:25137244 Cco05g0297 Cco-Chr5:2362607 3.00E-49 dispersed
Cco05g0297 Cco-Chr5:2362607 Cco06g1642 Cco-Chr6:27029622 6.50E-57 dispersed
Cco05g0297 Cco-Chr5:2362607 Cco05g2702 Cco-Chr5:34922965 7.80E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0297 K00799 - csv:101219529 404.831