Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0307 ATGGCGGGCTTAGATTTGGGCTCTGCTTCTCACTTTGTTCATCAACTTCAGCACCGTTCTGTCGATCTTCACCTGCAGCATCCGACGGATGTAGACGACGGTTCCGACCACCATCCGAACTCCGGCGGCGAAATCGTCGCCCGGCGGTCCAGGGGCAGACCGCCCGGTTCTAAAAATAAACCGAAGCCACCGGTTATTATTACCAGAGAAAGCGCTAACACCCTCCGAGCCCACATCTTGGAAGTCAACTCCGGTTGCGATGTCTTTGACTCCGTCGCCACTTATGCTCGGAAGCGCCAGCGTGGCATCTGCATCTTGAGCGGCACCGGCACCGTCACCAACGTTACCTTACGGCAACCTGCATCAGCCGGTGCCGTTGTCACTCTCCCTGGCAGGTTCGAGATACTGTCTTTGTCGGGATCGTTCTTACCGCCACCGGCTCCACCGGGAGCTACGAGTTTGACTATCTTCCTTGCGGGTGGGCAAGGACAAATCGTCGGCGGGAATGTTGTTGGATCTTTGATTGCTTCTGGACCGGTGATCGTCATTGCGTCGTCGTTTACCAATGTTGCTTACGAGAGGTTGCCGTTGGACGAGGAGGAACAACCGTCGAACGGTGGTGGTGGGAGCCTTAGCAACCCGTTTCCGGACCCATCGGCTGGGTTGCCGTTCTTTAATCTACCGTCGAGCATGGCGGGGAATCAAAATCAGCTGCCGGTGGACGGATGGGGTGGAGGAAACTCCGGTGGGAGAGCATCTTATTGA 765 56.47 MAGLDLGSASHFVHQLQHRSVDLHLQHPTDVDDGSDHHPNSGGEIVARRSRGRPPGSKNKPKPPVIITRESANTLRAHILEVNSGCDVFDSVATYARKRQRGICILSGTGTVTNVTLRQPASAGAVVTLPGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGSLIASGPVIVIASSFTNVAYERLPLDEEEQPSNGGGGSLSNPFPDPSAGLPFFNLPSSMAGNQNQLPVDGWGGGNSGGRASY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2457360 2458291 + CcPI632755_05g003070.1 Cco05g0307 177935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0307 254 CDD DUF296 76 185 IPR005175 -
Cco05g0307 254 MobiDBLite consensus disorder prediction 199 254 - -
Cco05g0307 254 MobiDBLite consensus disorder prediction 26 65 - -
Cco05g0307 254 MobiDBLite consensus disorder prediction 26 44 - -
Cco05g0307 254 ProSiteProfiles PPC domain profile profile. 72 214 IPR005175 -
Cco05g0307 254 MobiDBLite consensus disorder prediction 228 242 - -
Cco05g0307 254 FunFam AT-hook motif nuclear-localized protein 75 202 - -
Cco05g0307 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 201 - -
Cco05g0307 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 188 IPR005175 -
Cco05g0307 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 206 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco05g0307 254 Gene3D - 75 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0360 Cco-Chr1:3573258 Cco05g0307 Cco-Chr5:2457360 1.20E-69 dispersed
Cco05g0307 Cco-Chr5:2457360 Cco09g1233 Cco-Chr9:12556308 2.20E-80 dispersed
Cco10g0178 Cco-Chr10:1723080 Cco05g0307 Cco-Chr5:2457360 1.20E-12 wgd
Cco05g0307 Cco-Chr5:2457360 Cco06g0068 Cco-Chr6:630749 7.40E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0307 - - - 0.0