Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g0314 | ATGGAGGTGAGTTGGGCTGTGGCGGCGGTAGCTGCAGCAGCGGCAGTGTTTGCGGCGGTGAAATGGGCGGCGAAGAGTTTGAATGAGTGGATATATGAGGCGAAATTAGGTGATCGGCGGATGGCTCTGCCGCCGGGGGATTTGGGATGGCCTATAATTGGAAATATGTTGGGTTTTCTTAGAGCTTTCAAGTCCAAGAACCCTGAAACCTTCATTGATAGCTATGTTTCCAGGTTTGGGAAAATAGGAGTGTACAAGGTTCATTTGTTTGGAAACCCTAGCGTGGTCGTGACGACGCCGGAGACATGCCGGAAAGTTCTTACAGACGACGAGGCCTTTCAGCCCGGTTGGCCACGCGCGGCCGTAGAGCTCATCGGAAAGAAGTCCTTCATCGAAATGCCGGTCGAGGAACACAAGCGCCTTCGCCGCTTAACCTCTGCTCCGGTGAACGGTTTCGAGGCTTTGAGCAATTACATTCCTTACATCGAAGAGAATGTATTGAAATCGTTGGATAAATGGTCCAATATGGGGCCAATCGAATTCTTAACTCAACTTCGTAAGCTCACATTCACCATTATCATGTACATTTTCCTTAGCGCGGAGAGCGAATCGGTAATGGAGGCGTTAGAGAAGGAGTACACTCGGCTGAACTACGGTGTTCGAGCCCTGAGAATTAACATACCTGGATTTGCTTACCACAGAGCACTCAAGGCTCGGAAGAATCTTGTGGCTGCGTTGCAAGCAATTGTTACTGATCGAAGAAAACGAAGATTGGACAAATGGGCGCCGATGAGGAAGGACATGATGGACGCTCTGATTGATGTTGAAGATGAAAATGGCAGAAAATTGACTGATGAGGAGATCATTGATATCTTAGTGATGTACTTGAATGCTGGTCATGAATCTTCAGGCCATACCATGATGTGGGCAACTATTTTGTTGAATCAACACCCAAAAGTTCTCAAGAAAGCTAAGGCAGAGCAGGAGGAGATTGTGAGGAGGAGACCTCCAGGTCAAAAGGGATTGACTTTGAAAGAATGCAGGGAAATGGAATATCTCTCAAAAGTGGTCGACGAGACTCTTCGCTATGTATCATTCTCCCTTGTTGTCTTCAGAGAAGCACAGATGGATGTCAATCTTAATGGCTATCTAATTCCCAAGGGTTGGAAAGTCCTGGCTTGGTTCAGAAGCATTCACTATGACAGTGAAGTTTACCCAGACCCAAAGAAATTTGATCCTTCAAGATGGGATGGATTTATCCCAAAAGCAGGCGAGTTTCTTCCATTTGGAGCAGGAAGCAGGCTGTGCCCAGGAAATGATCTAGCCAAATTGGAGATCTGCATTTTCATTCACTATTTTCTACTCAATTACAAGCTTGAATGGCTGACCCCTGATTGTCCAATCTTGTATCTGCCACATTCAAGGCCAAAGGACAATTGCTTGGCTAAAATCAGTAAGAATTCCAGCACTGTTGTGTAA | 1479 | 46.32 | MEVSWAVAAVAAAAAVFAAVKWAAKSLNEWIYEAKLGDRRMALPPGDLGWPIIGNMLGFLRAFKSKNPETFIDSYVSRFGKIGVYKVHLFGNPSVVVTTPETCRKVLTDDEAFQPGWPRAAVELIGKKSFIEMPVEEHKRLRRLTSAPVNGFEALSNYIPYIEENVLKSLDKWSNMGPIEFLTQLRKLTFTIIMYIFLSAESESVMEALEKEYTRLNYGVRALRINIPGFAYHRALKARKNLVAALQAIVTDRRKRRLDKWAPMRKDMMDALIDVEDENGRKLTDEEIIDILVMYLNAGHESSGHTMMWATILLNQHPKVLKKAKAEQEEIVRRRPPGQKGLTLKECREMEYLSKVVDETLRYVSFSLVVFREAQMDVNLNGYLIPKGWKVLAWFRSIHYDSEVYPDPKKFDPSRWDGFIPKAGEFLPFGAGSRLCPGNDLAKLEICIFIHYFLLNYKLEWLTPDCPILYLPHSRPKDNCLAKISKNSSTVV | 492 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2493845 | 2500677 | - | CcPI632755_05g003140.1 | Cco05g0314 | 177942 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g0314 | 492 | PRINTS | E-class P450 group I signature | 394 | 418 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0314 | 492 | PRINTS | E-class P450 group I signature | 436 | 459 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0314 | 492 | PRINTS | E-class P450 group I signature | 307 | 333 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0314 | 492 | PRINTS | E-class P450 group I signature | 426 | 436 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0314 | 492 | FunFam | Ent-kaurenoic acid oxidase | 34 | 487 | - | - | |
| Cco05g0314 | 492 | PANTHER | CYTOCHROME P450 26 | 42 | 464 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Cco05g0314 | 492 | PRINTS | P450 superfamily signature | 427 | 436 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0314 | 492 | PRINTS | P450 superfamily signature | 298 | 315 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0314 | 492 | PRINTS | P450 superfamily signature | 355 | 366 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0314 | 492 | PRINTS | P450 superfamily signature | 436 | 447 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0314 | 492 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 429 | 438 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco05g0314 | 492 | Pfam | Cytochrome P450 | 44 | 462 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0314 | 492 | Gene3D | Cytochrome P450 | 34 | 487 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g0314 | 492 | CDD | CYP90-like | 76 | 486 | - | - | |
| Cco05g0314 | 492 | SUPERFAMILY | Cytochrome P450 | 39 | 484 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g0314 | Cco-Chr5:2493845 | Cco10g0190 | Cco-Chr10:1881134 | 3.50E-127 | dispersed | |
| Cco09g0918 | Cco-Chr9:8622392 | Cco05g0314 | Cco-Chr5:2493845 | 4.70E-90 | transposed | |
| Cco10g0189 | Cco-Chr10:1849342 | Cco05g0314 | Cco-Chr5:2493845 | 2.30E-132 | wgd | |
| Cco05g0314 | Cco-Chr5:2493845 | Cco06g0072 | Cco-Chr6:669503 | 5.80E-199 | wgd | |
| Cco05g0314 | Cco-Chr5:2493845 | Cco09g1260 | Cco-Chr9:13411578 | 1.70E-129 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g0314 | K04123 | - | csv:101221667 | 944.495 |