Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g0323 | ATGCCTCCAAGGAAGAAGCCTCATTCTTCTTCCAAGAAGCTCAATTCAAATCAGCCATCACAGCCTTCCAAGTTTGGAATCCAACACTTCTTCGAACGCCACTCTCAAAATGTTGCGCATTCTCAGAAGATCACTTCACAAACTTCCGATTCAAAAACTGATGTTTCTAACTCTCTGAATCATGGAGATGATTCGAATGTGGGACGGTCAGATTCTAAGGACGCAGCTGCGGCGGCGACAGCTCAAAAGTCTGAGTCGCGGGTGCTTCTTGTGAGTGATGCGGTCTTAGCTTCTGAAAACCCTAAGGTACCTCAGGGCAATGATGCGGGCTGTTCGTCTTTGAGTACGACGCCTGAGAATTTGATTGCAGCTTGTGGAAATACTGGCGATGACCTTTCTAACGACCTGTCTCCAGAATTTTCCAAGTCAGCGTCCCTGAAGCGCTTCAAGTTCTCTCCCGGAATGCTGATTAAGCAAAGTCAGGATGAGGGGACTACAAATGATGAGATTACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCAAAGCAACTGCCGGAAACTATAAGAGTTCTGGCGAACTCATCAAGGCTAAGTTCTTTGAGAATTCGACAGTGTTCACGAAATAAGACTTCCTCTGTCAAGCCTGGGAATTTTGAGCAGTTGAGTTCACCAAACCCGAAACCTTCTGAAAGATCAACGAGTTCGTTAAATAAGACTGGACTGAAAAGGTTAAATCCTAAAGATGAAATGGAACCCAATGGAGCGATTGATAGTTCGAGTGGCTCTAGAGTAGCTAACAGTCAGAGTCCATTCCAGACGCCCCCATCTATGTCATACTGCGACAAGATTGCCAATGATGTTGCTGCATGTAATGAAGCAACTGAACACCCTATTTTAAGGCCACACAAAAAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATAGCTGTTGATACTGTGGCTCCTTCCATTGACTTGGAGGAGGATTCATCTGAATTACGAGGTAGAAATGGTAACACATTGACTACCAGATTTGATTCAGCTGCTATGAAAGTTCCTAAAAAGATTCCAGACACCGTAATGAAGACGTCCCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAAATGTGAGCTGGCTGATGCATCTGGAGTAAAACGCTCGTATAAGGTTCTTCGTTTGTTAAATGAGCAAAGTGGAGAAGAGCGGGCTGTATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCACCTGGAGACACCGTGAATGTTATTGGTGAATTTGATGACCAAGGAAGATGTCATATTGACCACGACAATAATTTTGTTATCCTACAACCTGATATACTTGTCTCTGGAACTCGGGTTGCAGGTCACTTGACCTGTCCAAGGAGGAGTGTTCTTGATGAGAGGTTGAAAAGTAACGAACAGTCTATTTCAGCATTAATTGGTACTTTGCTGCACCAGGTTTTTCAGGCTGGTCTTATAGAAGAGGCACCAACTGTTGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTTCAGAAAAGTATGGAAAATGTATATGCATGCGGAGCAAATGAAAAGGATATACACATAACCATGAATGAAGCAGTTCCAAAAATTTTGCATTGGATCACCATCTTCAAAAGCCCAATGGGTTCTAAAGCACCTAATGTTGAGTTTAGATCTGAGGATGGTCCCAGGAAAGTTAGTATATCGGAGGTGATTGATATCGAGGAGATGGCATGGGCTCCAAAATATGGTTTGAAAGGAATGATTGATGCTTCTGTCAGGGTAAACATAATGTCAAATTATAGTAAATGTGCCGAGAATGTCATGCCTTTAGAGTTTAAAACCGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGTGCCCAAGTGATCTTGTACACTCTACTTATGTCCGAGAGGTATCACAAACATGTTGGTTATGGTCTCCTTTATTATCTCCAGTCGGATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATTCTCAAGGCATCAACTGCACAATTACTCCCCCCTATGTTACAGATTCCAAATGTGTGCAAAGGATGCCGCCATCTTGATGTTTGTACCATTTATCATAAGATGCAAAATGGGAGCAAAGAGACCAGTGGGCTTGGAGTTTTATTTGACTCCCATACAGATCACTTGAAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAGGCCAAGGAGATGGAGATTGTAAAGAGGGGAGTTTGGCACTCACGTAGTGCAGAGAAAAATCAAATGTCTACCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCTGCTATCGTTTTGTGCGTCAAGATATGCCTTCTCTGTGTTTGAAAGATTCAAATGACGGTAGTTCAAACACTGCTTCGATAAGTGACATGGACAGTTCACTTAGAGTTGGAGACTATGTGATACTTAGTACAGATTCTGGGCATTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGCCTCCATATATCCGTTTCTTTTTGTAAGCGCCTACGTTTGCCTGGAAGCACTTCTTATACAGAAGCACATGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTTGTACAACTGTTTCTGCAAGGTGAACAAAATGCTCATCTTAGAAAGTTGATCGTAGATCTTGCGGCTCCAAGATTTGATGGTGGATGCATATTCAGCCAGGATCCAGCAATATCTTACATCTGGTCAGAGAAGAATTTAAATGATGACCAACGACGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCTCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCTACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCCATTTTGCTCACGTCTTACACAAACACTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTATACGGATTGGAAGAATTAATGCGGTGCACGAAGACGTTCGCAGCCATTGCTTCTCGGAGTTGAACATACAAAGTGTGGAAGACATCAGATTGAGATTGGACCAAGTGAAAGTTGTTGCAGTTACTTGTTTAGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGACGAAGCTGGACAGACCACCCTTCCAGTTTCGCTTGGGCCTTTGATGTTTGCTTCAACATTTGTCCTTGTTGGCGATCACTATCAGCTACCTCCTCTTGTTCAAAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCCGCATTGCAAAGCCAGTATCGCATGTGCCGAGACATTATGGAATTATCAAACTCCTTAATATATGGAGACAGATTACGTTGTGGTTCTGCAGAAACCGCGAACGCAAAGCTTGAACTTTCAAGTTCGAAGTTGTGTTCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTAGTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAACCCAACTGAGGCTAGCATAGTAGCAGAGGTGACGAAGGGATTGCTTGATGGTGGGATTAAGGGGAATGAAGTTGGCATCATTACCCCGTATAACGCCCAGGCAAGCATCATTCGTCTAGCTATCAACATAGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGAAGAGATAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGTGAAAATCCAAAGAGCTGTACTACCTCACTTCTTGGAGACTGGCATAGAATTAATGTGGCCATTACCCGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCACTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATCTTGAGTGTTCGTCTCGGGGGTTGTGTATCAAATGCCATGTGGGAAGCACTGAGAAAAAATGTTGTCTACTTGCGGAAAAGGCCATGGACAAGAAGGGTTGGAAAGGATGGAAGAGAAGAGCACATTTGA | 4230 | 42.7 | MPPRKKPHSSSKKLNSNQPSQPSKFGIQHFFERHSQNVAHSQKITSQTSDSKTDVSNSLNHGDDSNVGRSDSKDAAAAATAQKSESRVLLVSDAVLASENPKVPQGNDAGCSSLSTTPENLIAACGNTGDDLSNDLSPEFSKSASLKRFKFSPGMLIKQSQDEGTTNDEITWKISPVNERLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVKPGNFEQLSSPNPKPSERSTSSLNKTGLKRLNPKDEMEPNGAIDSSSGSRVANSQSPFQTPPSMSYCDKIANDVAACNEATEHPILRPHKKALLELLDQVEDVIAVDTVAPSIDLEEDSSELRGRNGNTLTTRFDSAAMKVPKKIPDTVMKTSPCDFLVLEVTEKCELADASGVKRSYKVLRLLNEQSGEERAVYLWEDWFDSIIAPGDTVNVIGEFDDQGRCHIDHDNNFVILQPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSISALIGTLLHQVFQAGLIEEAPTVAFLEEVSRTVLQKSMENVYACGANEKDIHITMNEAVPKILHWITIFKSPMGSKAPNVEFRSEDGPRKVSISEVIDIEEMAWAPKYGLKGMIDASVRVNIMSNYSKCAENVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYHKHVGYGLLYYLQSDQTQGIRVQRSDLVGLIMRRNELANNILKASTAQLLPPMLQIPNVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFDSHTDHLKASHGIFFQHWERLIDLEAKEMEIVKRGVWHSRSAEKNQMSTCLSSIVLSTLDDQPHCTFEKDNRICYRFVRQDMPSLCLKDSNDGSSNTASISDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHISVSFCKRLRLPGSTSYTEAHDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKSQNIDFIRIGRINAVHEDVRSHCFSELNIQSVEDIRLRLDQVKVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNSLIYGDRLRCGSAETANAKLELSSSKLCSSWLKEVLNPCKPVIFVCTDLVPAYETRDHKIVNNPTEASIVAEVTKGLLDGGIKGNEVGIITPYNAQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILSVRLGGCVSNAMWEALRKNVVYLRKRPWTRRVGKDGREEHI | 1409 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2582444 | 2600122 | - | CcPI632755_05g003230.1 | Cco05g0323 | 177951 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g0323 | 1409 | Gene3D | - | 458 | 722 | IPR011604 | - | |
| Cco05g0323 | 1409 | Pfam | AAA domain | 1145 | 1345 | IPR041679 | - | |
| Cco05g0323 | 1409 | CDD | SF1_C_Upf1 | 1169 | 1362 | IPR047187 | - | |
| Cco05g0323 | 1409 | MobiDBLite | consensus disorder prediction | 206 | 245 | - | - | |
| Cco05g0323 | 1409 | MobiDBLite | consensus disorder prediction | 34 | 65 | - | - | |
| Cco05g0323 | 1409 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 967 | 1354 | IPR027417 | - | |
| Cco05g0323 | 1409 | Gene3D | - | 1167 | 1374 | IPR027417 | - | |
| Cco05g0323 | 1409 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
| Cco05g0323 | 1409 | FunFam | DNA replication helicase Dna2 | 903 | 1166 | - | - | |
| Cco05g0323 | 1409 | FunFam | DNA replication helicase | 1167 | 1377 | - | - | |
| Cco05g0323 | 1409 | MobiDBLite | consensus disorder prediction | 259 | 281 | - | - | |
| Cco05g0323 | 1409 | CDD | DEXXQc_DNA2 | 968 | 1168 | IPR026851 | GO:0017116(InterPro) | |
| Cco05g0323 | 1409 | FunFam | DNA replication helicase Dna2 | 567 | 722 | - | - | |
| Cco05g0323 | 1409 | MobiDBLite | consensus disorder prediction | 206 | 281 | - | - | |
| Cco05g0323 | 1409 | CDD | DNA2_N-like | 458 | 693 | - | - | |
| Cco05g0323 | 1409 | Gene3D | - | 902 | 1166 | IPR027417 | - | |
| Cco05g0323 | 1409 | PANTHER | DNA2/NAM7 HELICASE FAMILY | 218 | 1363 | IPR045055 | GO:0005737(PANTHER)|GO:0017108(PANTHER)|GO:0071932(PANTHER) | |
| Cco05g0323 | 1409 | Pfam | DNA replication factor Dna2 | 403 | 605 | IPR014808 | - | |
| Cco05g0323 | 1409 | Pfam | AAA domain | 968 | 1060 | IPR041677 | GO:0004386(InterPro) | |
| Cco05g0323 | 1409 | Pfam | AAA domain | 1069 | 1136 | IPR041677 | GO:0004386(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g0323 | Cco-Chr5:2582444 | Cco10g1696 | Cco-Chr10:30493397 | 2.60E-42 | dispersed | |
| Cco10g0202 | Cco-Chr10:2043539 | Cco05g0323 | Cco-Chr5:2582444 | 3.80E-32 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g0323 | K10742 | - | csv:101220726 | 2420.97 |