Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0344 | ATGTCTTTCAATCAATCAAGGCATGATAAGAATGAGGATCGTCAGTTTAAGAAATCTGGGCGATCGTCGAGCTTCAATCAACAGAAAATCTCTTGTGAACTTCATTCTAAGCCGGGCGATTCCGGCAGGTATGCGCCGCCGATCGTCTCCAACCATAGTGTTAAGCAGTCTAACGATGCGCAACAAGCACGGAAAACTAGGGCTGGTGTATCCTCTGTAAGTTCTACCGTTTCTACTACCCCTCGGGAAGGGCAAAACGGTTCTCATGTGCAGCCGCAACAGAATGGTTCAGCATCCAATCCAATAAAATTGTCAGGATCCCAAAGCGGGGTTGTTAAAAAAAATGCAACTTCTCGAACGGCCTCCAAGACTTCTGATGCATTTTTAGAATCCAAGAGCGGAATTGTTCAAAATAATGCGACTTCTAAGCCTACCTCAAAAACTTTCGGCACTACCTCCTTTAAAGACCTGGGGGAACAGCATATGACATTTCCACTTCAATTTGGATCCTTAAGTCCTGGTTTCCAGATTCCTAGGATCAGCTCAGCTCCTTCGAATCTGCAAGAACAGATATTGAACCAGGCACCACGCCATGTGTTTAAATCTGTACCTTCAGGGTCAGTGCAGCCAGTACCCAGACAACCAATAGCAAACAATGATTCCAGTGTCTGTGATCAACCAAATATTGGAACGTCCAATCCAGAGCCAGAGACCAAAAAGGAGATGCAAGTCTCGTCAGGAGCACCCGTAAGCCAGATTCAGAAGCCTTCCCATGTATCATTTGTTAGTCACAGAGCTTCTATTTCCCTCCCTGACAGTAAGAGTATGAGCCTTGTGCATCATGTTGCTAATTCACCTAATGTGAAAGAAGTCCAAGTTCATGATGAGAACTGTACTTCCTCAGCAGCAAAGCATGTGGCGATGCAGTCTCTTCCTGGGTCTTTGACGCAGGTCATCTACTCATGTCCTAAAGAAAGCCTATCTAAGTCAATTAAGGCCGATAACAAAGTATCCGGCAAGAAAGGACCGATTCAACTGCTGCATCAGGTTGAGGTTGCAGATCCCATTTTTTATATTAAGCTGGAATCCTCTTTGCAATTCGAGCAATCAAAGCATGAGCTCGTTGGAACAGAAAAGGTAGGAGCAAGAAGATCGCCTGATTCTCAAGACAACATAGAACAAAGTAAACCACCATCTTGTATGAAGCCAACGGCAATTAATAACGGCAATTCAACGTCAAAAACACTGAAAGAAGTTGGCAGTACAAACGACAATAATGTTCTTTCTAACTCCATAACTCATGGTTGTAAGACTTCACCTATTATTATATCTTCTTGTCAAAGTGATAGTAACACTATCGATGATACTGTAGTTTGCCGAGCTGATCTGCAATCTCCTCTTGTTGAAACTTCTGACCTCTCAGAGATGAAGCAGGAAGGAGATAGAATAGAGCACACAGGTGGTCAATGTGACCCTAATTTTAGACCCTTTATTGAAGATAAATCTGTCATAGACATAAATAAGATGAGGAATAGGTCGAAGAAGAAGAGGAAGGAAATTCTTCGGAAGGCAGATGCTGCTGGGACTACTTCCGACCTTTATATGGCATATAAAGAACCTGAAGAGAAGAAAGAGACTACTATCTCTGCAGAAAGCTCCAATGAGAGCATAAATATGAAACACGAGTCTGCTGGTTCCTTAAAGGAAGAGGCTGCCTTGACCAAGAAGGATGTTCAGGGTAAACTCGAGCCAGATGATTGGGAAGATGCAGTTGATAATTCTACTGATACATTGAAATACGAGGGTGGTTTTGAGGATAAGGCCAACGGAAAAGTAGCATTGCACCTCGAGGATGGGAGTAGAGATCTGGCCAAAAAGTACTCCAGAGATTTCCTCCTGAAATTCGCCGAGCAGTTCATGGACCTTCCCGATGGGTTTGAAGTTTCTCCCAACATGAAGGCTTTAATGAGTAACCATGGCTCTCGTTCTGTCAATAGTAATTCACCTGCTAATCATGGAAAAATGGATAAGCCAAGTGGAGGGTCTCGACTTGATCATCGTGCTATTACTGTGGATGACAGACTATTTGCTTCAGGGCGGCATTCGCACTTGGATAGCACTCGACCTACTCAAGGTGCTAACAATAGTGCTGTAAAGACCCCTTGGGCGCACACCGGTTCACAGGGAAAGATCCAAAGAAATGGCTCCAATACTGATAGGTGGCAAAGAGATGCTAGTTTTCAGCTGAAAGGTATAATTTCTCCTTCAACTCCATCACAGGTGATGCACAGAGCCGAGAAGAAATATGAAGTGGGTAAAGTGGCTGACCAGGAAGAGACCAAACAAAGACAGCTGAAGGCTATACTAAACAAGCTAACTCCACAAAATTTTGAAAAACTCTTTGAACAAGTGAAAGCAGTTAATATTGATAGTTCGAAGACACTAAGTGGTGTCATCTCTCAGATATTTGACAAAGCTCTGATGGAGCCTACTTTCTGTGAAATGTATGCCAATTTTTGTCTCCATCTGGCTGGCGAGTTACCTGATTTTAGCGATGATAATCAGAAGATTACTTTTAAGAGGTTGCTTTTAAACAAATGCCAAGAGGAATTTGAGAAAGAGCAGGAAGAAAATGATGAAGTTAATAAGGTCGGTGAGATGAAACAGTCTGCAGAGGAACGAGAAGTGAATAGAATAAAGGCGCGCAGAAGAATGCTTGGCAACATTAGGTTAATTGGGGAGCTTTACAAGAAAAAGATGATAACAGAGAAAATTATGCATGTATGCATCAAGAAATTGTTAGGTCAGTACCAAAATCCGGATGAGGAAGATATTGAAGCATTATGCAAATTGATGACCACTATAGGAGAAATGATAGATCACCCCAAAGCTAAGGAGCATATGAATGCATATTTTGAGATGATGACTAAATTATCTAATAACATGAAGCTGTCATCTAGAGTTAGATTCATGTTGAAGGATGCAATTGATTTGAGAAAGAATAAATGGCAACAGAGGAGAAAAATTGAAGGACCTAAAAAAATTGATGAAGTGCACAGGGATGCTGTGCAAGAACGTCAAGCGCAAGCTAGTAGATTAAGCCGTGGTCCTGGAATCAGTGCACCATTGAGGAGGGGAACATCCATGGATTTTGGTTCAAAAGCGCCTGCATTATTGCCTTCTCCCAATGCCCAGATTGGTGGTTTTCACGGTTTTTCAACCCAGAATTGTGGTTCAAGCAGTCAAGACGCTCGTTTTGAAGGTAAACTATGGTCTCCTGAGGCCAAGGCATTCCCAACTCCATTGCCCCAAAGACCTATCAGTGATGATGCTATCACTTTAGGTCCCCAGGGTAGTTTAGCTAGAGGGTCAAGATCCATTTCATCCAATTCATTAGTAGATTTGTCCTTGCCGACTGGTAATAACTGCCAAAGAATGGTAGCTGCTTTAAATCCTCATGGCTTTGTATCAGAGCATGCAATTTCCATCTCCAGAGGGGACATCCCTTCAAGAAAATTTTCAAAGGGAACTCTAGGTTCAGAATCCTTCGATCAGGCGACAAGTACACTGGAACCTGGTATTAGTTTTGGATCTAGGCGAAGGGGAAACGTTGATAGCGGTCTTGGGAGGTCTCAGCCGACCAAATATGAACAACCAGCTTTGACTACGAATGGCCATTCTGAGGTTACGTCCAAAGAACATCTACGAGATAAGTCCATAGCAGCTATTAGGGAATATTACAGTGCTAGAGATGAGAAGGAAGTTACTCTGTGCATCAAGGACTTGAATTCGCCTGAATTCCATTCATCCATGATTTCTCTTTGGGTCACAGACTCCTTTGAGAGAGAAAACACAGAAAGGGATCTTTTAGCTAAACTTCTTGTTAGCCTCACCAAATCAAAGGATTATACGTTGACTCAACTCCAACTTCTCAAAGGAATCCAGCTCGTTGTTGCCACACTGGAGGATGCTGTGAATGATGCCCCAAAAGCTCCAGAATTTATGGGCCGATTACTCGCTAACTTGGTGGTGGAAAACTTGATTTCATTGAAAGAAATCGGGAAGTTTATATATGAAGGTGGAGAGGAGGCTGGGAAGCTTCTACAAGTTGGGCTTGCAGCTGATGTTCTTGGCAACGTGCTGGAAGTAGTTCAATTGGAGAAAGGTCAGATTTTCTTGAACGAAATTCTTAAATGTTCTGATCTACAATTAGAAACATTTCGCCCTTCATACCCAATCAAATCAACAAAGTTAGAGAAATTTATTTAG | 4269 | 42.49 | MSFNQSRHDKNEDRQFKKSGRSSSFNQQKISCELHSKPGDSGRYAPPIVSNHSVKQSNDAQQARKTRAGVSSVSSTVSTTPREGQNGSHVQPQQNGSASNPIKLSGSQSGVVKKNATSRTASKTSDAFLESKSGIVQNNATSKPTSKTFGTTSFKDLGEQHMTFPLQFGSLSPGFQIPRISSAPSNLQEQILNQAPRHVFKSVPSGSVQPVPRQPIANNDSSVCDQPNIGTSNPEPETKKEMQVSSGAPVSQIQKPSHVSFVSHRASISLPDSKSMSLVHHVANSPNVKEVQVHDENCTSSAAKHVAMQSLPGSLTQVIYSCPKESLSKSIKADNKVSGKKGPIQLLHQVEVADPIFYIKLESSLQFEQSKHELVGTEKVGARRSPDSQDNIEQSKPPSCMKPTAINNGNSTSKTLKEVGSTNDNNVLSNSITHGCKTSPIIISSCQSDSNTIDDTVVCRADLQSPLVETSDLSEMKQEGDRIEHTGGQCDPNFRPFIEDKSVIDINKMRNRSKKKRKEILRKADAAGTTSDLYMAYKEPEEKKETTISAESSNESINMKHESAGSLKEEAALTKKDVQGKLEPDDWEDAVDNSTDTLKYEGGFEDKANGKVALHLEDGSRDLAKKYSRDFLLKFAEQFMDLPDGFEVSPNMKALMSNHGSRSVNSNSPANHGKMDKPSGGSRLDHRAITVDDRLFASGRHSHLDSTRPTQGANNSAVKTPWAHTGSQGKIQRNGSNTDRWQRDASFQLKGIISPSTPSQVMHRAEKKYEVGKVADQEETKQRQLKAILNKLTPQNFEKLFEQVKAVNIDSSKTLSGVISQIFDKALMEPTFCEMYANFCLHLAGELPDFSDDNQKITFKRLLLNKCQEEFEKEQEENDEVNKVGEMKQSAEEREVNRIKARRRMLGNIRLIGELYKKKMITEKIMHVCIKKLLGQYQNPDEEDIEALCKLMTTIGEMIDHPKAKEHMNAYFEMMTKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKIEGPKKIDEVHRDAVQERQAQASRLSRGPGISAPLRRGTSMDFGSKAPALLPSPNAQIGGFHGFSTQNCGSSSQDARFEGKLWSPEAKAFPTPLPQRPISDDAITLGPQGSLARGSRSISSNSLVDLSLPTGNNCQRMVAALNPHGFVSEHAISISRGDIPSRKFSKGTLGSESFDQATSTLEPGISFGSRRRGNVDSGLGRSQPTKYEQPALTTNGHSEVTSKEHLRDKSIAAIREYYSARDEKEVTLCIKDLNSPEFHSSMISLWVTDSFERENTERDLLAKLLVSLTKSKDYTLTQLQLLKGIQLVVATLEDAVNDAPKAPEFMGRLLANLVVENLISLKEIGKFIYEGGEEAGKLLQVGLAADVLGNVLEVVQLEKGQIFLNEILKCSDLQLETFRPSYPIKSTKLEKFI | 1422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2800598 | 2806865 | + | CcPI632755_05g003440.1 | Cco05g0344 | 177972 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 1025 | 1044 | - | - | |
Cco05g0344 | 1422 | Gene3D | - | 782 | 1015 | - | - | |
Cco05g0344 | 1422 | SUPERFAMILY | ARM repeat | 1231 | 1412 | IPR016024 | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 50 | 125 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 875 | 895 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 376 | 390 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 203 | 240 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 701 | 739 | - | - | |
Cco05g0344 | 1422 | ProSiteProfiles | MI domain profile. | 1234 | 1358 | IPR003891 | - | |
Cco05g0344 | 1422 | FunFam | Eukaryotic translation initiation factor 4G | 782 | 1015 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cco05g0344 | 1422 | Gene3D | - | 1226 | 1422 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 1205 | 1227 | - | - | |
Cco05g0344 | 1422 | SUPERFAMILY | ARM repeat | 776 | 1004 | IPR016024 | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 657 | 673 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 657 | 684 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 376 | 413 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
Cco05g0344 | 1422 | Coils | Coil | 864 | 884 | - | - | |
Cco05g0344 | 1422 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 230 | 1411 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER) | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 703 | 739 | - | - | |
Cco05g0344 | 1422 | FunFam | Eukaryotic translation initiation factor 4G | 1228 | 1421 | - | - | |
Cco05g0344 | 1422 | Pfam | MA3 domain | 1236 | 1348 | IPR003891 | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 207 | 240 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - | |
Cco05g0344 | 1422 | SMART | if4_15 | 782 | 1002 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cco05g0344 | 1422 | Pfam | MIF4G domain | 783 | 1002 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cco05g0344 | 1422 | SMART | ma3_7 | 1235 | 1349 | IPR003891 | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 391 | 413 | - | - | |
Cco05g0344 | 1422 | MobiDBLite | consensus disorder prediction | 1189 | 1227 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0344 | Cco-Chr5:2800598 | Cco06g0891 | Cco-Chr6:11127628 | 1.10E-266 | dispersed | |
Cco05g0344 | Cco-Chr5:2800598 | Cco06g1442 | Cco-Chr6:24881816 | 7.20E-56 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0344 | K03260 | - | csv:101222372 | 2209.49 |