Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0344 ATGTCTTTCAATCAATCAAGGCATGATAAGAATGAGGATCGTCAGTTTAAGAAATCTGGGCGATCGTCGAGCTTCAATCAACAGAAAATCTCTTGTGAACTTCATTCTAAGCCGGGCGATTCCGGCAGGTATGCGCCGCCGATCGTCTCCAACCATAGTGTTAAGCAGTCTAACGATGCGCAACAAGCACGGAAAACTAGGGCTGGTGTATCCTCTGTAAGTTCTACCGTTTCTACTACCCCTCGGGAAGGGCAAAACGGTTCTCATGTGCAGCCGCAACAGAATGGTTCAGCATCCAATCCAATAAAATTGTCAGGATCCCAAAGCGGGGTTGTTAAAAAAAATGCAACTTCTCGAACGGCCTCCAAGACTTCTGATGCATTTTTAGAATCCAAGAGCGGAATTGTTCAAAATAATGCGACTTCTAAGCCTACCTCAAAAACTTTCGGCACTACCTCCTTTAAAGACCTGGGGGAACAGCATATGACATTTCCACTTCAATTTGGATCCTTAAGTCCTGGTTTCCAGATTCCTAGGATCAGCTCAGCTCCTTCGAATCTGCAAGAACAGATATTGAACCAGGCACCACGCCATGTGTTTAAATCTGTACCTTCAGGGTCAGTGCAGCCAGTACCCAGACAACCAATAGCAAACAATGATTCCAGTGTCTGTGATCAACCAAATATTGGAACGTCCAATCCAGAGCCAGAGACCAAAAAGGAGATGCAAGTCTCGTCAGGAGCACCCGTAAGCCAGATTCAGAAGCCTTCCCATGTATCATTTGTTAGTCACAGAGCTTCTATTTCCCTCCCTGACAGTAAGAGTATGAGCCTTGTGCATCATGTTGCTAATTCACCTAATGTGAAAGAAGTCCAAGTTCATGATGAGAACTGTACTTCCTCAGCAGCAAAGCATGTGGCGATGCAGTCTCTTCCTGGGTCTTTGACGCAGGTCATCTACTCATGTCCTAAAGAAAGCCTATCTAAGTCAATTAAGGCCGATAACAAAGTATCCGGCAAGAAAGGACCGATTCAACTGCTGCATCAGGTTGAGGTTGCAGATCCCATTTTTTATATTAAGCTGGAATCCTCTTTGCAATTCGAGCAATCAAAGCATGAGCTCGTTGGAACAGAAAAGGTAGGAGCAAGAAGATCGCCTGATTCTCAAGACAACATAGAACAAAGTAAACCACCATCTTGTATGAAGCCAACGGCAATTAATAACGGCAATTCAACGTCAAAAACACTGAAAGAAGTTGGCAGTACAAACGACAATAATGTTCTTTCTAACTCCATAACTCATGGTTGTAAGACTTCACCTATTATTATATCTTCTTGTCAAAGTGATAGTAACACTATCGATGATACTGTAGTTTGCCGAGCTGATCTGCAATCTCCTCTTGTTGAAACTTCTGACCTCTCAGAGATGAAGCAGGAAGGAGATAGAATAGAGCACACAGGTGGTCAATGTGACCCTAATTTTAGACCCTTTATTGAAGATAAATCTGTCATAGACATAAATAAGATGAGGAATAGGTCGAAGAAGAAGAGGAAGGAAATTCTTCGGAAGGCAGATGCTGCTGGGACTACTTCCGACCTTTATATGGCATATAAAGAACCTGAAGAGAAGAAAGAGACTACTATCTCTGCAGAAAGCTCCAATGAGAGCATAAATATGAAACACGAGTCTGCTGGTTCCTTAAAGGAAGAGGCTGCCTTGACCAAGAAGGATGTTCAGGGTAAACTCGAGCCAGATGATTGGGAAGATGCAGTTGATAATTCTACTGATACATTGAAATACGAGGGTGGTTTTGAGGATAAGGCCAACGGAAAAGTAGCATTGCACCTCGAGGATGGGAGTAGAGATCTGGCCAAAAAGTACTCCAGAGATTTCCTCCTGAAATTCGCCGAGCAGTTCATGGACCTTCCCGATGGGTTTGAAGTTTCTCCCAACATGAAGGCTTTAATGAGTAACCATGGCTCTCGTTCTGTCAATAGTAATTCACCTGCTAATCATGGAAAAATGGATAAGCCAAGTGGAGGGTCTCGACTTGATCATCGTGCTATTACTGTGGATGACAGACTATTTGCTTCAGGGCGGCATTCGCACTTGGATAGCACTCGACCTACTCAAGGTGCTAACAATAGTGCTGTAAAGACCCCTTGGGCGCACACCGGTTCACAGGGAAAGATCCAAAGAAATGGCTCCAATACTGATAGGTGGCAAAGAGATGCTAGTTTTCAGCTGAAAGGTATAATTTCTCCTTCAACTCCATCACAGGTGATGCACAGAGCCGAGAAGAAATATGAAGTGGGTAAAGTGGCTGACCAGGAAGAGACCAAACAAAGACAGCTGAAGGCTATACTAAACAAGCTAACTCCACAAAATTTTGAAAAACTCTTTGAACAAGTGAAAGCAGTTAATATTGATAGTTCGAAGACACTAAGTGGTGTCATCTCTCAGATATTTGACAAAGCTCTGATGGAGCCTACTTTCTGTGAAATGTATGCCAATTTTTGTCTCCATCTGGCTGGCGAGTTACCTGATTTTAGCGATGATAATCAGAAGATTACTTTTAAGAGGTTGCTTTTAAACAAATGCCAAGAGGAATTTGAGAAAGAGCAGGAAGAAAATGATGAAGTTAATAAGGTCGGTGAGATGAAACAGTCTGCAGAGGAACGAGAAGTGAATAGAATAAAGGCGCGCAGAAGAATGCTTGGCAACATTAGGTTAATTGGGGAGCTTTACAAGAAAAAGATGATAACAGAGAAAATTATGCATGTATGCATCAAGAAATTGTTAGGTCAGTACCAAAATCCGGATGAGGAAGATATTGAAGCATTATGCAAATTGATGACCACTATAGGAGAAATGATAGATCACCCCAAAGCTAAGGAGCATATGAATGCATATTTTGAGATGATGACTAAATTATCTAATAACATGAAGCTGTCATCTAGAGTTAGATTCATGTTGAAGGATGCAATTGATTTGAGAAAGAATAAATGGCAACAGAGGAGAAAAATTGAAGGACCTAAAAAAATTGATGAAGTGCACAGGGATGCTGTGCAAGAACGTCAAGCGCAAGCTAGTAGATTAAGCCGTGGTCCTGGAATCAGTGCACCATTGAGGAGGGGAACATCCATGGATTTTGGTTCAAAAGCGCCTGCATTATTGCCTTCTCCCAATGCCCAGATTGGTGGTTTTCACGGTTTTTCAACCCAGAATTGTGGTTCAAGCAGTCAAGACGCTCGTTTTGAAGGTAAACTATGGTCTCCTGAGGCCAAGGCATTCCCAACTCCATTGCCCCAAAGACCTATCAGTGATGATGCTATCACTTTAGGTCCCCAGGGTAGTTTAGCTAGAGGGTCAAGATCCATTTCATCCAATTCATTAGTAGATTTGTCCTTGCCGACTGGTAATAACTGCCAAAGAATGGTAGCTGCTTTAAATCCTCATGGCTTTGTATCAGAGCATGCAATTTCCATCTCCAGAGGGGACATCCCTTCAAGAAAATTTTCAAAGGGAACTCTAGGTTCAGAATCCTTCGATCAGGCGACAAGTACACTGGAACCTGGTATTAGTTTTGGATCTAGGCGAAGGGGAAACGTTGATAGCGGTCTTGGGAGGTCTCAGCCGACCAAATATGAACAACCAGCTTTGACTACGAATGGCCATTCTGAGGTTACGTCCAAAGAACATCTACGAGATAAGTCCATAGCAGCTATTAGGGAATATTACAGTGCTAGAGATGAGAAGGAAGTTACTCTGTGCATCAAGGACTTGAATTCGCCTGAATTCCATTCATCCATGATTTCTCTTTGGGTCACAGACTCCTTTGAGAGAGAAAACACAGAAAGGGATCTTTTAGCTAAACTTCTTGTTAGCCTCACCAAATCAAAGGATTATACGTTGACTCAACTCCAACTTCTCAAAGGAATCCAGCTCGTTGTTGCCACACTGGAGGATGCTGTGAATGATGCCCCAAAAGCTCCAGAATTTATGGGCCGATTACTCGCTAACTTGGTGGTGGAAAACTTGATTTCATTGAAAGAAATCGGGAAGTTTATATATGAAGGTGGAGAGGAGGCTGGGAAGCTTCTACAAGTTGGGCTTGCAGCTGATGTTCTTGGCAACGTGCTGGAAGTAGTTCAATTGGAGAAAGGTCAGATTTTCTTGAACGAAATTCTTAAATGTTCTGATCTACAATTAGAAACATTTCGCCCTTCATACCCAATCAAATCAACAAAGTTAGAGAAATTTATTTAG 4269 42.49 MSFNQSRHDKNEDRQFKKSGRSSSFNQQKISCELHSKPGDSGRYAPPIVSNHSVKQSNDAQQARKTRAGVSSVSSTVSTTPREGQNGSHVQPQQNGSASNPIKLSGSQSGVVKKNATSRTASKTSDAFLESKSGIVQNNATSKPTSKTFGTTSFKDLGEQHMTFPLQFGSLSPGFQIPRISSAPSNLQEQILNQAPRHVFKSVPSGSVQPVPRQPIANNDSSVCDQPNIGTSNPEPETKKEMQVSSGAPVSQIQKPSHVSFVSHRASISLPDSKSMSLVHHVANSPNVKEVQVHDENCTSSAAKHVAMQSLPGSLTQVIYSCPKESLSKSIKADNKVSGKKGPIQLLHQVEVADPIFYIKLESSLQFEQSKHELVGTEKVGARRSPDSQDNIEQSKPPSCMKPTAINNGNSTSKTLKEVGSTNDNNVLSNSITHGCKTSPIIISSCQSDSNTIDDTVVCRADLQSPLVETSDLSEMKQEGDRIEHTGGQCDPNFRPFIEDKSVIDINKMRNRSKKKRKEILRKADAAGTTSDLYMAYKEPEEKKETTISAESSNESINMKHESAGSLKEEAALTKKDVQGKLEPDDWEDAVDNSTDTLKYEGGFEDKANGKVALHLEDGSRDLAKKYSRDFLLKFAEQFMDLPDGFEVSPNMKALMSNHGSRSVNSNSPANHGKMDKPSGGSRLDHRAITVDDRLFASGRHSHLDSTRPTQGANNSAVKTPWAHTGSQGKIQRNGSNTDRWQRDASFQLKGIISPSTPSQVMHRAEKKYEVGKVADQEETKQRQLKAILNKLTPQNFEKLFEQVKAVNIDSSKTLSGVISQIFDKALMEPTFCEMYANFCLHLAGELPDFSDDNQKITFKRLLLNKCQEEFEKEQEENDEVNKVGEMKQSAEEREVNRIKARRRMLGNIRLIGELYKKKMITEKIMHVCIKKLLGQYQNPDEEDIEALCKLMTTIGEMIDHPKAKEHMNAYFEMMTKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKIEGPKKIDEVHRDAVQERQAQASRLSRGPGISAPLRRGTSMDFGSKAPALLPSPNAQIGGFHGFSTQNCGSSSQDARFEGKLWSPEAKAFPTPLPQRPISDDAITLGPQGSLARGSRSISSNSLVDLSLPTGNNCQRMVAALNPHGFVSEHAISISRGDIPSRKFSKGTLGSESFDQATSTLEPGISFGSRRRGNVDSGLGRSQPTKYEQPALTTNGHSEVTSKEHLRDKSIAAIREYYSARDEKEVTLCIKDLNSPEFHSSMISLWVTDSFERENTERDLLAKLLVSLTKSKDYTLTQLQLLKGIQLVVATLEDAVNDAPKAPEFMGRLLANLVVENLISLKEIGKFIYEGGEEAGKLLQVGLAADVLGNVLEVVQLEKGQIFLNEILKCSDLQLETFRPSYPIKSTKLEKFI 1422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2800598 2806865 + CcPI632755_05g003440.1 Cco05g0344 177972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0344 1422 MobiDBLite consensus disorder prediction 1025 1044 - -
Cco05g0344 1422 Gene3D - 782 1015 - -
Cco05g0344 1422 SUPERFAMILY ARM repeat 1231 1412 IPR016024 -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 50 125 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 875 895 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 376 390 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 203 240 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 701 739 - -
Cco05g0344 1422 ProSiteProfiles MI domain profile. 1234 1358 IPR003891 -
Cco05g0344 1422 FunFam Eukaryotic translation initiation factor 4G 782 1015 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 1 19 - -
Cco05g0344 1422 Gene3D - 1226 1422 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 1205 1227 - -
Cco05g0344 1422 SUPERFAMILY ARM repeat 776 1004 IPR016024 -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 657 673 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 657 684 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 376 413 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 20 34 - -
Cco05g0344 1422 Coils Coil 864 884 - -
Cco05g0344 1422 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 230 1411 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Cco05g0344 1422 MobiDBLite consensus disorder prediction 703 739 - -
Cco05g0344 1422 FunFam Eukaryotic translation initiation factor 4G 1228 1421 - -
Cco05g0344 1422 Pfam MA3 domain 1236 1348 IPR003891 -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 207 240 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 1 125 - -
Cco05g0344 1422 SMART if4_15 782 1002 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco05g0344 1422 Pfam MIF4G domain 783 1002 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco05g0344 1422 SMART ma3_7 1235 1349 IPR003891 -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 391 413 - -
Cco05g0344 1422 MobiDBLite consensus disorder prediction 1189 1227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0344 Cco-Chr5:2800598 Cco06g0891 Cco-Chr6:11127628 1.10E-266 dispersed
Cco05g0344 Cco-Chr5:2800598 Cco06g1442 Cco-Chr6:24881816 7.20E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0344 K03260 - csv:101222372 2209.49