Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0376 ATGTCACTGACGCTAATCCCTGCCAAAACCCTGGAGGAGACCCATTCACCACAAGCCGGCAGGCACCGGAAGGAGCTCGAGAAAAGCTCGGCCATGGGGAAAGCCGACAATATCCTCCAAACACTCGGAGATTTCACCAGCAAAGAGAATTGGGACAATTTCTTCACCATACGCGGCCATGGCGATGCTTTTGAGTGGTATGCCGAGTGGCCCGAGCTCAAAGACCCACTCATTTCCCACCTTCCCACCCTCTCCAAATCCCCTTCTCCCCAGATTCTCGTTCCTGGTTGCGGCAACTCCAGTCTCTCTGAGCAGCTCTACGACGCGGGCTTTCGATGTATCACCAACATCGATTTCTCTAAAGTTGCAATCTCCGATATGCTGCGCCGGAACGTGAGGGAACGCCCCGATATGCGGTGGCGCGTCATGGATATGACGAACATGCAGTTCACGAACGATTCATTTGATGCTGTTGTTGATAAAGGTGGATTGGATGCTTTAATGGAGCCAGAAGTTGGTTCTAAGCTAGGAAGTCAATACTTATCCGAGGTGAAAAGAGTTCTAAAACCAGGAGGAAAGTTTATCTGTCTCACCTTAGCAGAATCTCATGTTCTAGGCTTGCTTTTTCCTAAGTTCCGTTTTGGATGGAAAATGAGTATTCATGTCATACCTCCAAAACCACCGAGTAAGCCTAATTTTCGAACCTTTATGGTGGTGGTGGAGAAGGATGAATCTACTACATGGCACCAGATAGAATCTTCTTTAAATTTTTCTTTGCTTGATTCCCGTGGAAATCAGACTCGTGAACTTGTCCAAACTCTTGAGAATGAGAATAGAGTCCGCCAAAAGTATTCTAGTGGTGCTGATTTATTATTCTCTCTCGAAGACCTGCAACTTGGAGCAAAGGGAGATCTGCAGAAGCTTCACCAAGGCCGTCGGGTTCAATTTACTTTAGGTGGACAAGGGACCTCTATTTTCAGTTACAGAGCTGTACTTCTTGATGCTCGGGAACATTCTGGCCCATTCTTGTACGAATGCGGAGTTTTTATAGTGCCCAAGACTCGAGCTCATGAATGGCTGTTCTCTTCAGAAGAAGGCCAGTGGATGGTTGTTGAAAGCTCAAAAGCCGCTCGCCTAATAATGGTTCTATTAGATGAAACACAATCTGGTGCCAACATGGATGCCATTCAGAAAGATTTGTCTCCCCTAGTTAAACAATTGGCACCTGGAGAAGATGACAGTGGATCTCAAATTCCATTTATGATGGCAAGTGATGGAATCAAGGAACGCAATTGTGTTTTCCAGGGTACATCTTCATTAACTGGTTCAATAGTGGTTGAAGATGTAATATATGAAAATGTAAGTGGTGATGCCAGCCGCATCTTCCCATCTGGAGATTTGATATTCCGTCGCCTCGTTTTCCAAAGAACGGAGAGTTTGGTGCAGTCTGAAGCTTTGTTGACAAGGGAGAGAGTTGATGACAAAATTTCTGGTCAGATGGACAGGAAAAAGTCTCATGCTTCATCCAAATCAAAAAATAAAGGAAAGAAGAGACTAAATAAGGATTCTAGTGACCAAATGAAGGTTTATCATGGCTACCTGGCAAGTTCTTATCATTCGGGGATCATTTCTGGGTTTATGTTGATATCTAGATATTTGGAGAGTGTAGCATCAGCTGGAACAATGGTGAACACAGTTGTCATTGGTCTTGGAGCAGGTTTACTGCCCATGTTCCTCCGTGCATGCATGTGTTTTTTACACATTGAGGTGGTTGAGTTAGATTCAACAATCTTCAATCTTGCACGGGATTACTTCGATTTTGCTGAGGATGCAGATTTGAAGGTTCATATTGCTGATGGGATTCAGTTCGTTAGAGAATTCAAAAATTATGGGACAAATGATTCATCAACGGTTGCTCTTGACAATGGAAAGTCTTCTCAAGTAGAACAGCAAGGAAACAAGAAGATTGACATACTTATCATTGACGTGGATGCAACAGACTCTAGCTCTGGAATGACCTGCCCAGCGGTTGATTTTGTAGAAGAGCCATTTCTACTGGCAGTGAAAGACGCCCTCTCTGAGCAGGGTCTTTTTATTGTAAACTTGGTCACACGATCTCCAACCGTTAACGATATGGTTGTCGCGAGGATGAAAGGAGTATTCAATCACCTTTTTTCGCTTCAACTTGAGGAAGATGTGAATGAAGTGTTGTTTGCTCTTCCTTCAGATTTCTGTATAAAGGAGGATCTCTTCAGTGAAGCAGCTCTTCAACTTGAGAAGCTTTTAAATCTGAAACACCTAGAAATGAGGCAGAGCATAGTTGATGCTACAAAGAAGATTAGATGTTTGAAGTAG 2355 43.82 MSLTLIPAKTLEETHSPQAGRHRKELEKSSAMGKADNILQTLGDFTSKENWDNFFTIRGHGDAFEWYAEWPELKDPLISHLPTLSKSPSPQILVPGCGNSSLSEQLYDAGFRCITNIDFSKVAISDMLRRNVRERPDMRWRVMDMTNMQFTNDSFDAVVDKGGLDALMEPEVGSKLGSQYLSEVKRVLKPGGKFICLTLAESHVLGLLFPKFRFGWKMSIHVIPPKPPSKPNFRTFMVVVEKDESTTWHQIESSLNFSLLDSRGNQTRELVQTLENENRVRQKYSSGADLLFSLEDLQLGAKGDLQKLHQGRRVQFTLGGQGTSIFSYRAVLLDAREHSGPFLYECGVFIVPKTRAHEWLFSSEEGQWMVVESSKAARLIMVLLDETQSGANMDAIQKDLSPLVKQLAPGEDDSGSQIPFMMASDGIKERNCVFQGTSSLTGSIVVEDVIYENVSGDASRIFPSGDLIFRRLVFQRTESLVQSEALLTRERVDDKISGQMDRKKSHASSKSKNKGKKRLNKDSSDQMKVYHGYLASSYHSGIISGFMLISRYLESVASAGTMVNTVVIGLGAGLLPMFLRACMCFLHIEVVELDSTIFNLARDYFDFAEDADLKVHIADGIQFVREFKNYGTNDSSTVALDNGKSSQVEQQGNKKIDILIIDVDATDSSSGMTCPAVDFVEEPFLLAVKDALSEQGLFIVNLVTRSPTVNDMVVARMKGVFNHLFSLQLEEDVNEVLFALPSDFCIKEDLFSEAALQLEKLLNLKHLEMRQSIVDATKKIRCLK 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3043377 3053225 - CcPI632755_05g003760.1 Cco05g0376 178004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0376 784 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 516 764 - -
Cco05g0376 784 Pfam Methyltransferase domain 95 196 IPR013216 GO:0008757(InterPro)
Cco05g0376 784 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 213 IPR029063 -
Cco05g0376 784 Gene3D Vaccinia Virus protein VP39 500 773 IPR029063 -
Cco05g0376 784 MobiDBLite consensus disorder prediction 496 522 - -
Cco05g0376 784 Gene3D Vaccinia Virus protein VP39 43 258 IPR029063 -
Cco05g0376 784 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 507 703 IPR051419 -
Cco05g0376 784 FunFam Methyltransferase-like protein 13 43 254 - -
Cco05g0376 784 CDD AdoMet_MTases 92 196 - -
Cco05g0376 784 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 564 749 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0376 K25166 - - csv:101211869 1375.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0376 Cco-Chr5:3043377 Cco09g0432 Cco-Chr9:3848229 9.20E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00339 Cam05g0371 Cec05g0375 Cco05g0376 Clacu05g0365 Cmu05g0350 Cre05g0414 . Csa03g01086 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010449 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 32