Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0383 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGCATGTACTCGGCCATTCCGGCGCTGCCGATGGACGGCGGCGGCGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCTGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTGCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACGCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCAACCGAGAACTCAAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCCTCGTCGTCGCCATCGTCGAGAATAATGACACAGGATCTGAATGATGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCGTCCGCCGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCAAAAGGCTCCTACCGTTATGCCTCGAATAGGCGATTGCTCGATGGATAGCTGCTTGACATCAGCTGGTAGCCCAGTTTCCCCAATCAGAGTAGGATCAACTGCCACCGCAATGAAGAGACCGAGGCCAGTTTTTAGTCATGGAGATTCAATGGCTCTCGAGGGCAATGCCCGACACGATGTCGAATGGATGATGAGTAATATTGGATGA 948 50.95 MLSGFSQEPAGMYSAIPALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENQKAPTVMPRIGDCSMDSCLTSAGSPVSPIRVGSTATAMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3112556 3116305 - CcPI632755_05g003830.1 Cco05g0383 178011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0383 315 FunFam Myb family transcription factor 49 107 - -
Cco05g0383 315 SUPERFAMILY Homeodomain-like 50 107 IPR009057 -
Cco05g0383 315 Coils Coil 205 225 - -
Cco05g0383 315 MobiDBLite consensus disorder prediction 114 139 - -
Cco05g0383 315 Gene3D - 49 108 - -
Cco05g0383 315 Pfam MYB-CC type transfactor, LHEQLE motif 148 193 IPR025756 -
Cco05g0383 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677(InterPro)
Cco05g0383 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Cco05g0383 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 28 279 IPR046955 GO:0003700(InterPro)
Cco05g0383 315 MobiDBLite consensus disorder prediction 113 139 - -
Cco05g0383 315 Pfam Myb-like DNA-binding domain 52 103 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1886 Cco-Chr4:33440664 Cco05g0383 Cco-Chr5:3112556 3.30E-46 dispersed
Cco05g0383 Cco-Chr5:3112556 Cco09g2488 Cco-Chr9:39010121 3.00E-39 dispersed
Cco05g0383 Cco-Chr5:3112556 Cco02g2008 Cco-Chr2:33035249 1.00E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59213 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0383 - - - 0.0