Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0386 ATGTTCCTGCTTCTGAAAAGTGACACTTTTTGGGATTCTGGCGGATCTGTGGCTGTTGATGTTGGCACTCTCGAGCAAAGTGAAAATTGTCTTGAGGTGAAAAAGAGCATAGAAATTGAGTTGGTTCGATTAAAGTTTGGTGTGTTGTATGCATATACGCTTATAGCCAATCCAATGGAGAAAGACGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGGTTCGACGATGATGACGAACCTCCCGGTATTGACCCGGTCTACTTCCTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCGGCCGGAGAGGAGGAAGCAGCGGAGACGGGAGGGAGATTAATTGTTGGGGAATTAGAAGAGGAGGATAATTTTAGGAATAATAATAATATTAATAATAACGTTAATAATAATAATAATAATAATAATAACAACAATAATAATAATAAAAGGAAAAGAGCACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACACATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTCCGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTCTATTAGGAGAACCACCACTGGTGCAGGGGGCCGATACACCGGCGTCGCAGCAACCACCATTTCTACCGGGTAATTTTCCAGGTCATCAAAACGAGGGGCAAATATTGGAAACGACAGCGGAGAGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCCTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGATAGCAAGTGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA 1311 46.3 MFLLLKSDTFWDSGGSVAVDVGTLEQSENCLEVKKSIEIELVRLKFGVLYAYTLIANPMEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDDDDEPPGIDPVYFLKFPVLNNERAEEAAAAGEEEAAETGGRLIVGELEEEDNFRNNNNINNNVNNNNNNNNNNNNNNKRKRARTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLVQGADTPASQQPPFLPGNFPGHQNEGQILETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3149754 3158208 - CcPI632755_05g003860.1 Cco05g0386 178014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0386 436 CDD bHLH_AtFAMA_like 241 309 - -
Cco05g0386 436 PANTHER TRANSCRIPTION FACTOR FAMA 171 428 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cco05g0386 436 ProSiteProfiles ACT domain profile. 362 436 IPR002912 -
Cco05g0386 436 MobiDBLite consensus disorder prediction 197 241 - -
Cco05g0386 436 Pfam Helix-loop-helix DNA-binding domain 239 290 IPR011598 GO:0046983(InterPro)
Cco05g0386 436 Gene3D - 211 304 IPR036638 GO:0046983(InterPro)
Cco05g0386 436 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 289 IPR011598 GO:0046983(InterPro)
Cco05g0386 436 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 308 IPR036638 GO:0046983(InterPro)
Cco05g0386 436 SMART finulus 244 295 IPR011598 GO:0046983(InterPro)
Cco05g0386 436 MobiDBLite consensus disorder prediction 199 223 - -
Cco05g0386 436 CDD ACT_UUR-ACR-like 362 426 - -
Cco05g0386 436 MobiDBLite consensus disorder prediction 227 241 - -
Cco05g0386 436 FunFam Basic helix-loop-helix transcription factor 229 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0004 Cco-Chr5:50100 Cco05g0386 Cco-Chr5:3149754 4.60E-42 dispersed
Cco05g0386 Cco-Chr5:3149754 Cco05g0638 Cco-Chr5:5194208 2.40E-39 dispersed
Cco05g0386 Cco-Chr5:3149754 Cco08g1287 Cco-Chr8:24643432 4.60E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59214 PF00010 HLH 9.50E-10 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0386 K26213 - csv:101214530 596.275