Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0387 ATGGGTAGCGGAGAAAAGGTTTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACGAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAGGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAAGATGCAACCGACGACTTCGAAGACGTGGGCCACAGTGACAATGCAAGAGAGATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTCGCCTACACACCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTTGCCATACGCTTCTACACCAAACAAGCTTGA 405 46.67 MGSGEKVFTLKEVAEHNNHEDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3164184 3166528 + CcPI632755_05g003870.1 Cco05g0387 178015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0387 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 90 IPR036400 -
Cco05g0387 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cco05g0387 134 PANTHER CYTOCHROME B5 5 131 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cco05g0387 134 FunFam Cytochrome b5 type B 3 85 - -
Cco05g0387 134 Gene3D - 2 86 IPR036400 -
Cco05g0387 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cco05g0387 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Cco05g0387 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cco05g0387 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cco05g0387 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cco05g0387 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cco05g0387 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0024 Cco-Chr1:143104 Cco05g0387 Cco-Chr5:3164184 2.90E-47 dispersed
Cco05g0071 Cco-Chr5:646435 Cco05g0387 Cco-Chr5:3164184 6.50E-36 dispersed
Cco05g0387 Cco-Chr5:3164184 Cco06g0283 Cco-Chr6:3099359 9.80E-32 dispersed
Cco06g0340 Cco-Chr6:3810311 Cco05g0387 Cco-Chr5:3164184 2.10E-09 transposed
Cco08g1201 Cco-Chr8:23729642 Cco05g0387 Cco-Chr5:3164184 4.20E-27 transposed
Cco05g0387 Cco-Chr5:3164184 Cco06g0811 Cco-Chr6:9552183 1.00E-57 wgd
Cco05g0387 Cco-Chr5:3164184 Cco07g0190 Cco-Chr7:2006895 4.70E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0387 K23490 - csv:101214209 273.863