Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0387 ATGGGTAGCGGAGAAAAGGTTTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACGAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAGGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAAGATGCAACCGACGACTTCGAAGACGTGGGCCACAGTGACAATGCAAGAGAGATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTCGCCTACACACCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTTGCCATACGCTTCTACACCAAACAAGCTTGA 405 46.67 MGSGEKVFTLKEVAEHNNHEDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3164184 3166528 + CcPI632755_05g003870.1 Cco05g0387 178015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0387 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 90 IPR036400 -
Cco05g0387 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cco05g0387 134 PANTHER CYTOCHROME B5 5 131 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cco05g0387 134 FunFam Cytochrome b5 type B 3 85 - -
Cco05g0387 134 Gene3D - 2 86 IPR036400 -
Cco05g0387 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cco05g0387 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Cco05g0387 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cco05g0387 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cco05g0387 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cco05g0387 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cco05g0387 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0387 K23490 - - csv:101214209 273.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0024 Cco-Chr1:143104 Cco05g0387 Cco-Chr5:3164184 2.90E-47 dispersed
Cco05g0071 Cco-Chr5:646435 Cco05g0387 Cco-Chr5:3164184 6.50E-36 dispersed
Cco05g0387 Cco-Chr5:3164184 Cco06g0283 Cco-Chr6:3099359 9.80E-32 dispersed
Cco06g0340 Cco-Chr6:3810311 Cco05g0387 Cco-Chr5:3164184 2.10E-09 transposed
Cco08g1201 Cco-Chr8:23729642 Cco05g0387 Cco-Chr5:3164184 4.20E-27 transposed
Cco05g0387 Cco-Chr5:3164184 Cco06g0811 Cco-Chr6:9552183 1.00E-57 wgd
Cco05g0387 Cco-Chr5:3164184 Cco07g0190 Cco-Chr7:2006895 4.70E-50 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0387 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.3e-51 197.6
Cco01g0024 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cco06g0811 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.3e-47 186.0
Cco07g0190 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cco05g0387 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.3e-47 185.3
Cco06g0811 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.5e-46 181.8
Cco07g0190 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cco01g0024 . 23 138 NADPH P450 reductases AT5G48810 61.9 3.5e-40 161.4
Cco05g0387 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cco06g0811 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.4e-47 183.7
Cco07g0190 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cco01g0024 . 18 137 NADPH P450 reductases AT2G32720 65.0 1.5e-40 162.5
Cco08g1201 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Cco04g0671 . 2 281 NADPH P450 reductases AT5G17770 81.4 3.3e-130 461.5
Cco10g1651 . 2 280 NADPH P450 reductases AT5G17770 77.8 1.7e-126 449.1
Cco02g2578 . 10 282 NADPH P450 reductases AT5G17770 73.6 4.2e-117 417.9
Cco05g0387 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.3e-51 197.6
Cco01g0024 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cco06g0811 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.3e-47 186.0
Cco07g0190 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cco05g0387 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.3e-47 185.3
Cco06g0811 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.5e-46 181.8
Cco07g0190 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cco01g0024 . 23 138 NADPH P450 reductases AT5G48810 61.9 3.5e-40 161.4
Cco05g0387 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cco06g0811 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.4e-47 183.7
Cco07g0190 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cco01g0024 . 18 137 NADPH P450 reductases AT2G32720 65.0 1.5e-40 162.5
Cco08g1201 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Cco04g0671 . 2 281 NADPH P450 reductases AT5G17770 81.4 3.3e-130 461.5
Cco10g1651 . 2 280 NADPH P450 reductases AT5G17770 77.8 1.7e-126 449.1
Cco02g2578 . 10 282 NADPH P450 reductases AT5G17770 73.6 4.2e-117 417.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156